Papin JA - Search Results

1

Reconciled rat and human metabolic networks for comparative toxicogenomics and biomarker predictions.

Blais EM, Rawls KD, Dougherty BV, Li ZI, Kolling GL, Ye P, Wallqvist A, Papin JA. Blais EM, et al. Among authors: papin ja. Nat Commun. 2017 Feb 8;8:14250. doi: 10.1038/ncomms14250. Nat Commun. 2017. PMID: 28176778 Free PMC article.

2

Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1.

Oberhardt MA, Puchałka J, Fryer KE, Martins dos Santos VA, Papin JA. Oberhardt MA, et al. Among authors: papin ja. J Bacteriol. 2008 Apr;190(8):2790-803. doi: 10.1128/JB.01583-07. Epub 2008 Jan 11. J Bacteriol. 2008. PMID: 18192387 Free PMC article.

3

Flux balance analysis: interrogating genome-scale metabolic networks.

Oberhardt MA, Chavali AK, Papin JA. Oberhardt MA, et al. Among authors: papin ja. Methods Mol Biol. 2009;500:61-80. doi: 10.1007/978-1-59745-525-1_3. Methods Mol Biol. 2009. PMID: 19399432

4

Metabolic network analysis integrated with transcript verification for sequenced genomes.

Manichaikul A, Ghamsari L, Hom EF, Lin C, Murray RR, Chang RL, Balaji S, Hao T, Shen Y, Chavali AK, Thiele I, Yang X, Fan C, Mello E, Hill DE, Vidal M, Salehi-Ashtiani K, Papin JA. Manichaikul A, et al. Among authors: papin ja. Nat Methods. 2009 Aug;6(8):589-92. doi: 10.1038/nmeth.1348. Epub 2009 Jul 13. Nat Methods. 2009. PMID: 19597503 Free PMC article.

5

Applications of genome-scale metabolic reconstructions.

Oberhardt MA, Palsson BØ, Papin JA. Oberhardt MA, et al. Among authors: papin ja. Mol Syst Biol. 2009;5:320. doi: 10.1038/msb.2009.77. Epub 2009 Nov 3. Mol Syst Biol. 2009. PMID: 19888215 Free PMC article. Review.

6

A scalable systems analysis approach for regulated metabolic networks.

Jensen PA, Papin JA. Jensen PA, et al. Among authors: papin ja. Annu Int Conf IEEE Eng Med Biol Soc. 2009;2009:5464-5. doi: 10.1109/IEMBS.2009.5334060. Annu Int Conf IEEE Eng Med Biol Soc. 2009. PMID: 19964682

7

Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis.

Oberhardt MA, Puchałka J, Martins dos Santos VA, Papin JA. Oberhardt MA, et al. Among authors: papin ja. PLoS Comput Biol. 2011 Mar;7(3):e1001116. doi: 10.1371/journal.pcbi.1001116. Epub 2011 Mar 31. PLoS Comput Biol. 2011. PMID: 21483480 Free PMC article.

8

TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks.

Jensen PA, Lutz KA, Papin JA. Jensen PA, et al. Among authors: papin ja. BMC Syst Biol. 2011 Sep 23;5:147. doi: 10.1186/1752-0509-5-147. BMC Syst Biol. 2011. PMID: 21943338 Free PMC article.

9

Whole-genome metabolic network reconstruction and constraint-based modeling.

Haggart CR, Bartell JA, Saucerman JJ, Papin JA. Haggart CR, et al. Among authors: papin ja. Methods Enzymol. 2011;500:411-33. doi: 10.1016/B978-0-12-385118-5.00021-9. Methods Enzymol. 2011. PMID: 21943909 Free PMC article.

10

Systems analysis of the transcriptional response of human ileocecal epithelial cells to Clostridium difficile toxins and effects on cell cycle control.

D'Auria KM, Donato GM, Gray MC, Kolling GL, Warren CA, Cave LM, Solga MD, Lannigan JA, Papin JA, Hewlett EL. D'Auria KM, et al. Among authors: papin ja. BMC Syst Biol. 2012 Jan 6;6:2. doi: 10.1186/1752-0509-6-2. BMC Syst Biol. 2012. PMID: 22225989 Free PMC article.

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