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1,539 results
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Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes.
Kim M, Oh HS, Park SC, Chun J. Kim M, et al. Among authors: park sc. Int J Syst Evol Microbiol. 2014 Feb;64(Pt 2):346-351. doi: 10.1099/ijs.0.059774-0. Int J Syst Evol Microbiol. 2014. PMID: 24505072
Improved pipeline for reducing erroneous identification by 16S rRNA sequences using the Illumina MiSeq platform.
Jeon YS, Park SC, Lim J, Chun J, Kim BS. Jeon YS, et al. Among authors: park sc. J Microbiol. 2015 Jan;53(1):60-9. doi: 10.1007/s12275-015-4601-y. Epub 2015 Jan 4. J Microbiol. 2015. PMID: 25557481
Evaluation of 16S rRNA Databases for Taxonomic Assignments Using Mock Community.
Park SC, Won S. Park SC, et al. Genomics Inform. 2018 Dec;16(4):e24. doi: 10.5808/GI.2018.16.4.e24. Epub 2018 Dec 28. Genomics Inform. 2018. PMID: 30602085 Free PMC article.
Large-Scale Genomics Reveals the Genetic Characteristics of Seven Species and Importance of Phylogenetic Distance for Estimating Pan-Genome Size.
Park SC, Lee K, Kim YO, Won S, Chun J. Park SC, et al. Front Microbiol. 2019 Apr 24;10:834. doi: 10.3389/fmicb.2019.00834. eCollection 2019. Front Microbiol. 2019. PMID: 31068915 Free PMC article.
OrthoANI: An improved algorithm and software for calculating average nucleotide identity.
Lee I, Ouk Kim Y, Park SC, Chun J. Lee I, et al. Among authors: park sc. Int J Syst Evol Microbiol. 2016 Feb;66(2):1100-1103. doi: 10.1099/ijsem.0.000760. Epub 2015 Nov 9. Int J Syst Evol Microbiol. 2016. PMID: 26585518
Large-scale evaluation of experimentally determined DNA G+C contents with whole genome sequences of prokaryotes.
Kim M, Park SC, Baek I, Chun J. Kim M, et al. Among authors: park sc. Syst Appl Microbiol. 2015 Mar;38(2):79-83. doi: 10.1016/j.syapm.2014.11.008. Epub 2014 Dec 24. Syst Appl Microbiol. 2015. PMID: 25564067
Burkholderia megalochromosomata sp. nov., isolated from grassland soil.
Baek I, Seo B, Lee I, Lee K, Park SC, Yi H, Chun J. Baek I, et al. Among authors: park sc. Int J Syst Evol Microbiol. 2015 Mar;65(Pt 3):959-964. doi: 10.1099/ijs.0.000046. Epub 2015 Jan 6. Int J Syst Evol Microbiol. 2015. PMID: 25563916
EzEditor: a versatile sequence alignment editor for both rRNA- and protein-coding genes.
Jeon YS, Lee K, Park SC, Kim BS, Cho YJ, Ha SM, Chun J. Jeon YS, et al. Among authors: park sc. Int J Syst Evol Microbiol. 2014 Feb;64(Pt 2):689-691. doi: 10.1099/ijs.0.059360-0. Epub 2013 Dec 18. Int J Syst Evol Microbiol. 2014. PMID: 24425826
Flavobacterium limnosediminis sp. nov., isolated from sediment of a freshwater lake.
Lee K, Park SC, Yi H, Chun J. Lee K, et al. Among authors: park sc. Int J Syst Evol Microbiol. 2013 Dec;63(Pt 12):4784-4789. doi: 10.1099/ijs.0.055566-0. Epub 2013 Aug 30. Int J Syst Evol Microbiol. 2013. PMID: 23996833
Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species.
Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J. Kim OS, et al. Among authors: park sc. Int J Syst Evol Microbiol. 2012 Mar;62(Pt 3):716-721. doi: 10.1099/ijs.0.038075-0. Epub 2011 Nov 25. Int J Syst Evol Microbiol. 2012. PMID: 22140171
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