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Histone deacetylase inhibitors: molecular mechanisms of action.
Xu WS, Parmigiani RB, Marks PA. Xu WS, et al. Oncogene. 2007 Aug 13;26(37):5541-52. doi: 10.1038/sj.onc.1210620. Oncogene. 2007. PMID: 17694093 Review.
Histone deacetylase inhibitors selectively suppress expression of HDAC7.
Dokmanovic M, Perez G, Xu W, Ngo L, Clarke C, Parmigiani RB, Marks PA. Dokmanovic M, et al. Mol Cancer Ther. 2007 Sep;6(9):2525-34. doi: 10.1158/1535-7163.MCT-07-0251. Mol Cancer Ther. 2007. PMID: 17876049
HDAC6 is a specific deacetylase of peroxiredoxins and is involved in redox regulation.
Parmigiani RB, Xu WS, Venta-Perez G, Erdjument-Bromage H, Yaneva M, Tempst P, Marks PA. Parmigiani RB, et al. Proc Natl Acad Sci U S A. 2008 Jul 15;105(28):9633-8. doi: 10.1073/pnas.0803749105. Epub 2008 Jul 7. Proc Natl Acad Sci U S A. 2008. PMID: 18606987 Free PMC article.
Characterization of a cancer/testis (CT) antigen gene family capable of eliciting humoral response in cancer patients.
Parmigiani RB, Bettoni F, Vibranovski MD, Lopes MH, Martins WK, Cunha IW, Soares FA, Simpson AJ, de Souza SJ, Camargo AA. Parmigiani RB, et al. Proc Natl Acad Sci U S A. 2006 Nov 28;103(48):18066-71. doi: 10.1073/pnas.0608853103. Epub 2006 Nov 17. Proc Natl Acad Sci U S A. 2006. PMID: 17114284 Free PMC article.
E2F1 somatic mutation within miRNA target site impairs gene regulation in colorectal cancer.
Lopes-Ramos CM, Barros BP, Koyama FC, Carpinetti PA, Pezuk J, Doimo NTS, Habr-Gama A, Perez RO, Parmigiani RB. Lopes-Ramos CM, et al. Among authors: parmigiani rb. PLoS One. 2017 Jul 13;12(7):e0181153. doi: 10.1371/journal.pone.0181153. eCollection 2017. PLoS One. 2017. PMID: 28704519 Free PMC article.
Alternative polyadenylation allows differential negative feedback of human miRNA miR-579 on its host gene ZFR.
Hinske LC, Galante PA, Limbeck E, Möhnle P, Parmigiani RB, Ohno-Machado L, Camargo AA, Kreth S. Hinske LC, et al. Among authors: parmigiani rb. PLoS One. 2015 Mar 23;10(3):e0121507. doi: 10.1371/journal.pone.0121507. eCollection 2015. PLoS One. 2015. PMID: 25799583 Free PMC article.
Identification and complete sequencing of novel human transcripts through the use of mouse orthologs and testis cDNA sequences.
Ferreira EN, Pires LC, Parmigiani RB, Bettoni F, Puga RD, Pinheiro DG, Andrade LE, Cruz LO, Degaki TL, Faria M Jr, Festa F, Giannella-Neto D, Giorgi RR, Goldman GH, Granja F, Gruber A, Hackel C, Henrique-Silva F, Malnic B, Manzini CV, Marie SK, Martinez-Rossi NM, Oba-Shinjo SM, Pardini MI, Rahal P, Rainho CA, Rogatto SR, Romano CM, Rodrigues V, Sales MM, Savoldi M, da Silva ID, da Silva NP, de Souza SJ, Tajara EH, Silva WA Jr, Simpson AJ, Sogayar MC, Camargo AA, Carraro DM. Ferreira EN, et al. Genet Mol Res. 2004 Dec 30;3(4):493-511. Genet Mol Res. 2004. PMID: 15688316
Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual.
Galante PA, Parmigiani RB, Zhao Q, Caballero OL, de Souza JE, Navarro FC, Gerber AL, Nicolás MF, Salim AC, Silva AP, Edsall L, Devalle S, Almeida LG, Ye Z, Kuan S, Pinheiro DG, Tojal I, Pedigoni RG, de Sousa RG, Oliveira TY, de Paula MG, Ohno-Machado L, Kirkness EF, Levy S, da Silva WA Jr, Vasconcelos AT, Ren B, Zago MA, Strausberg RL, Simpson AJ, de Souza SJ, Camargo AA. Galante PA, et al. Nucleic Acids Res. 2011 Aug;39(14):6056-68. doi: 10.1093/nar/gkr221. Epub 2011 Apr 14. Nucleic Acids Res. 2011. PMID: 21493686 Free PMC article.
Identification of FAM46D as a novel cancer/testis antigen using EST data and serological analysis.
Bettoni F, Filho FC, Grosso DM, Galante PA, Parmigiani RB, Geraldo MV, Henrique-Silva F, Oba-Shinjo SM, Marie SK, Soares FA, Brentani HP, Simpson AJ, de Souza SJ, Camargo AA. Bettoni F, et al. Genomics. 2009 Sep;94(3):153-60. doi: 10.1016/j.ygeno.2009.06.001. Epub 2009 Jun 18. Genomics. 2009. PMID: 19540335
A novel human G protein-coupled receptor is over-expressed in prostate cancer.
Parmigiani RB, Magalhães GS, Galante PA, Manzini CV, Camargo AA, Malnic B. Parmigiani RB, et al. Genet Mol Res. 2004 Dec 30;3(4):521-31. Genet Mol Res. 2004. PMID: 15688318
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