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Multithreaded variant calling in elPrep 5.
Herzeel C, Costanza P, Decap D, Fostier J, Wuyts R, Verachtert W. Herzeel C, et al. Among authors: costanza p. PLoS One. 2021 Feb 4;16(2):e0244471. doi: 10.1371/journal.pone.0244471. eCollection 2021. PLoS One. 2021. PMID: 33539352 Free PMC article.
Halvade somatic: Somatic variant calling with Apache Spark.
Decap D, de Schaetzen van Brienen L, Larmuseau M, Costanza P, Herzeel C, Wuyts R, Marchal K, Fostier J. Decap D, et al. Among authors: costanza p. Gigascience. 2022 Jan 12;11(1):giab094. doi: 10.1093/gigascience/giab094. Gigascience. 2022. PMID: 35022699 Free PMC article.
elPrep 4: A multithreaded framework for sequence analysis.
Herzeel C, Costanza P, Decap D, Fostier J, Verachtert W. Herzeel C, et al. Among authors: costanza p. PLoS One. 2019 Feb 13;14(2):e0209523. doi: 10.1371/journal.pone.0209523. eCollection 2019. PLoS One. 2019. PMID: 30759172 Free PMC article.
Halvade: scalable sequence analysis with MapReduce.
Decap D, Reumers J, Herzeel C, Costanza P, Fostier J. Decap D, et al. Among authors: costanza p. Bioinformatics. 2015 Aug 1;31(15):2482-8. doi: 10.1093/bioinformatics/btv179. Epub 2015 Mar 26. Bioinformatics. 2015. PMID: 25819078 Free PMC article.