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A knowledge-driven protocol for prediction of proteins of interest with an emphasis on biosynthetic pathways.
Joshi AG, Harini K, Meenakshi I, Shafi KM, Pasha SN, Mahita J, Sajeevan RS, Karpe SD, Ghosh P, Nitish S, Gandhimathi A, Mathew OK, Prasanna SH, Malini M, Mutt E, Naika M, Ravooru N, Rao RM, Shingate PN, Sukhwal A, Sunitha MS, Upadhyay AK, Vinekar RS, Sowdhamini R. Joshi AG, et al. Among authors: pasha sn. MethodsX. 2020 Sep 2;7:101053. doi: 10.1016/j.mex.2020.101053. eCollection 2020. MethodsX. 2020. PMID: 33024710 Free PMC article.
The transcriptome enables the identification of candidate genes behind medicinal value of Drumstick tree (Moringa oleifera).
Pasha SN, Shafi KM, Joshi AG, Meenakshi I, Harini K, Mahita J, Sajeevan RS, Karpe SD, Ghosh P, Nitish S, Gandhimathi A, Mathew OK, Prasanna SH, Malini M, Mutt E, Naika M, Ravooru N, Rao RM, Shingate PN, Sukhwal A, Sunitha MS, Upadhyay AK, Vinekar RS, Sowdhamini R. Pasha SN, et al. Genomics. 2020 Jan;112(1):621-628. doi: 10.1016/j.ygeno.2019.04.014. Epub 2019 Apr 29. Genomics. 2020. PMID: 31048014 Free article.
Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties.
Upadhyay AK, Chacko AR, Gandhimathi A, Ghosh P, Harini K, Joseph AP, Joshi AG, Karpe SD, Kaushik S, Kuravadi N, Lingu CS, Mahita J, Malarini R, Malhotra S, Malini M, Mathew OK, Mutt E, Naika M, Nitish S, Pasha SN, Raghavender US, Rajamani A, Shilpa S, Shingate PN, Singh HR, Sukhwal A, Sunitha MS, Sumathi M, Ramaswamy S, Gowda M, Sowdhamini R. Upadhyay AK, et al. Among authors: pasha sn. BMC Plant Biol. 2015 Aug 28;15:212. doi: 10.1186/s12870-015-0562-x. BMC Plant Biol. 2015. PMID: 26315624 Free PMC article.
Dataset for the combined transcriptome assembly of M. oleifera and functional annotation.
Shafi KM, Joshi AG, Meenakshi I, Pasha SN, Harini K, Mahita J, Sajeevan RS, Karpe SD, Ghosh P, Nitish S, Gandhimathi A, Mathew OK, Prasanna SH, Malini M, Mutt E, Naika M, Ravooru N, Rao RM, Shingate PN, Sukhwal A, Sunitha MS, Upadhyay AK, Vinekar RS, Sowdhamini R. Shafi KM, et al. Among authors: pasha sn. Data Brief. 2020 Mar 20;30:105416. doi: 10.1016/j.dib.2020.105416. eCollection 2020 Jun. Data Brief. 2020. PMID: 32309524 Free PMC article.
Exploring the medicinally important secondary metabolites landscape through the lens of transcriptome data in fenugreek (Trigonella foenum graecum L.).
Naika MBN, Sathyanarayanan N, Sajeevan RS, Bhattacharyya T, Ghosh P, Iyer MS, Jarjapu M, Joshi AG, Harini K, Shafi KM, Kalmankar N, Karpe SD, Mam B, Pasha SN, Sowdhamini R. Naika MBN, et al. Among authors: pasha sn. Sci Rep. 2022 Aug 8;12(1):13534. doi: 10.1038/s41598-022-17779-8. Sci Rep. 2022. PMID: 35941189 Free PMC article.
Viral and Host Factors Are Associated With Mortality in Hospitalized Patients With COVID-19.
Aggarwal NR, Nordwall J, Braun DL, Chung L, Coslet J, Der T, Eriobu N, Ginde AA, Hayanga AJ, Highbarger H, Holodniy M, Horcajada JP, Jain MK, Kim K, Laverdure S, Lundgren J, Natarajan V, Nguyen HH, Pett SL, Phillips A, Poulakou G, Price DA, Robinson P, Rogers AJ, Sandkovsky U, Shaw-Saliba K, Sturek JM, Trautner BW, Waters M, Reilly C; ACTIV-3/TICO Study Group. Aggarwal NR, et al. Clin Infect Dis. 2024 Feb 20:ciad780. doi: 10.1093/cid/ciad780. Online ahead of print. Clin Infect Dis. 2024. PMID: 38376212
16 results