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Fast coarse-grained model for RNA titration.
Barroso da Silva FL, Derreumaux P, Pasquali S. Barroso da Silva FL, et al. Among authors: pasquali s. J Chem Phys. 2017 Jan 21;146(3):035101. doi: 10.1063/1.4972986. J Chem Phys. 2017. PMID: 28109220
Coarse-grained simulations of RNA and DNA duplexes.
Cragnolini T, Derreumaux P, Pasquali S. Cragnolini T, et al. Among authors: pasquali s. J Phys Chem B. 2013 Jul 11;117(27):8047-60. doi: 10.1021/jp400786b. Epub 2013 Jun 26. J Phys Chem B. 2013. PMID: 23730911
The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems.
Sterpone F, Melchionna S, Tuffery P, Pasquali S, Mousseau N, Cragnolini T, Chebaro Y, St-Pierre JF, Kalimeri M, Barducci A, Laurin Y, Tek A, Baaden M, Nguyen PH, Derreumaux P. Sterpone F, et al. Among authors: pasquali s. Chem Soc Rev. 2014 Jul 7;43(13):4871-93. doi: 10.1039/c4cs00048j. Epub 2014 Apr 23. Chem Soc Rev. 2014. PMID: 24759934 Free PMC article. Review.
Epock: rapid analysis of protein pocket dynamics.
Laurent B, Chavent M, Cragnolini T, Dahl AC, Pasquali S, Derreumaux P, Sansom MS, Baaden M. Laurent B, et al. Among authors: pasquali s. Bioinformatics. 2015 May 1;31(9):1478-80. doi: 10.1093/bioinformatics/btu822. Epub 2014 Dec 12. Bioinformatics. 2015. PMID: 25505095 Free PMC article.
Amyloid β Protein and Alzheimer's Disease: When Computer Simulations Complement Experimental Studies.
Nasica-Labouze J, Nguyen PH, Sterpone F, Berthoumieu O, Buchete NV, Coté S, De Simone A, Doig AJ, Faller P, Garcia A, Laio A, Li MS, Melchionna S, Mousseau N, Mu Y, Paravastu A, Pasquali S, Rosenman DJ, Strodel B, Tarus B, Viles JH, Zhang T, Wang C, Derreumaux P. Nasica-Labouze J, et al. Among authors: pasquali s. Chem Rev. 2015 May 13;115(9):3518-63. doi: 10.1021/cr500638n. Epub 2015 Mar 19. Chem Rev. 2015. PMID: 25789869 Free PMC article. Review.
Ab initio RNA folding.
Cragnolini T, Derreumaux P, Pasquali S. Cragnolini T, et al. Among authors: pasquali s. J Phys Condens Matter. 2015 Jun 17;27(23):233102. doi: 10.1088/0953-8984/27/23/233102. Epub 2015 May 20. J Phys Condens Matter. 2015. PMID: 25993396 Review.
494 results