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A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway.
Miller MA, Schwartz T, Pickett BE, He S, Klem EB, Scheuermann RH, Passarotti M, Kaufman S, O'Leary MA. Miller MA, et al. Among authors: passarotti m. Evol Bioinform Online. 2015 Mar 16;11:43-8. doi: 10.4137/EBO.S21501. eCollection 2015. Evol Bioinform Online. 2015. PMID: 25861210 Free PMC article. Review.
Crowds Replicate Performance of Scientific Experts Scoring Phylogenetic Matrices of Phenotypes.
O'Leary MA, Alphonse K, Mariangeles AH, Cavaliere D, Cirranello A, Dietterich TG, Julius M, Kaufman S, Law E, Passarotti M, Reft A, Robalino J, Simmons NB, Smith SY, Stevenson DW, Theriot E, Velazco PM, Walls RL, Yu M, Daly M. O'Leary MA, et al. Among authors: passarotti m. Syst Biol. 2018 Jan 1;67(1):49-60. doi: 10.1093/sysbio/syx052. Syst Biol. 2018. PMID: 29253296
Next-generation phenomics for the Tree of Life.
Burleigh JG, Alphonse K, Alverson AJ, Bik HM, Blank C, Cirranello AL, Cui H, Daly M, Dietterich TG, Gasparich G, Irvine J, Julius M, Kaufman S, Law E, Liu J, Moore L, O'Leary MA, Passarotti M, Ranade S, Simmons NB, Stevenson DW, Thacker RW, Theriot EC, Todorovic S, Velazco PM, Walls RL, Wolfe JM, Yu M. Burleigh JG, et al. Among authors: passarotti m. PLoS Curr. 2013 Jun 26;5:ecurrents.tol.085c713acafc8711b2ff7010a4b03733. doi: 10.1371/currents.tol.085c713acafc8711b2ff7010a4b03733. PLoS Curr. 2013. PMID: 23827969 Free PMC article.