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The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion.
Kao D, Lai AG, Stamataki E, Rosic S, Konstantinides N, Jarvis E, Di Donfrancesco A, Pouchkina-Stancheva N, Sémon M, Grillo M, Bruce H, Kumar S, Siwanowicz I, Le A, Lemire A, Eisen MB, Extavour C, Browne WE, Wolff C, Averof M, Patel NH, Sarkies P, Pavlopoulos A, Aboobaker A. Kao D, et al. Among authors: Patel NH. Elife. 2016 Nov 16;5:e20062. doi: 10.7554/eLife.20062. Elife. 2016. PMID: 27849518 Free PMC article.
Crustaceans.
VanHook AM, Patel NH. VanHook AM, et al. Among authors: Patel NH. Curr Biol. 2008 Jul 8;18(13):R547-50. doi: 10.1016/j.cub.2008.05.021. Curr Biol. 2008. PMID: 18606120 No abstract available.
Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.
Speiser DI, Pankey MS, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR, Patel NH, Porter ML, Protas ME, Rivera AS, Serb JM, Zigler KS, Crandall KA, Oakley TH. Speiser DI, et al. Among authors: Patel NH. BMC Bioinformatics. 2014 Nov 19;15(1):350. doi: 10.1186/s12859-014-0350-x. BMC Bioinformatics. 2014. PMID: 25407802 Free PMC article.
Knockdown of Parhyale Ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology.
Liubicich DM, Serano JM, Pavlopoulos A, Kontarakis Z, Protas ME, Kwan E, Chatterjee S, Tran KD, Averof M, Patel NH. Liubicich DM, et al. Among authors: Patel NH. Version 2. Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):13892-6. doi: 10.1073/pnas.0903105106. Epub 2009 Aug 4. Proc Natl Acad Sci U S A. 2009. PMID: 19666517 Free PMC article.
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