Patil A - Search Results

1

TimeXNet: identifying active gene sub-networks using time-course gene expression profiles.

Patil A, Nakai K. Patil A, et al. BMC Syst Biol. 2014;8 Suppl 4(Suppl 4):S2. doi: 10.1186/1752-0509-8-S4-S2. Epub 2014 Dec 8. BMC Syst Biol. 2014. PMID: 25522063 Free PMC article.

2

Assessing the utility of gene co-expression stability in combination with correlation in the analysis of protein-protein interaction networks.

Patil A, Nakai K, Kinoshita K. Patil A, et al. BMC Genomics. 2011 Nov 30;12 Suppl 3(Suppl 3):S19. doi: 10.1186/1471-2164-12-S3-S19. Epub 2011 Nov 30. BMC Genomics. 2011. PMID: 22369639 Free PMC article.

3

Linking transcriptional changes over time in stimulated dendritic cells to identify gene networks activated during the innate immune response.

Patil A, Kumagai Y, Liang KC, Suzuki Y, Nakai K. Patil A, et al. PLoS Comput Biol. 2013;9(11):e1003323. doi: 10.1371/journal.pcbi.1003323. Epub 2013 Nov 7. PLoS Comput Biol. 2013. PMID: 24244133 Free PMC article.

4

Identification of novel motif patterns to decipher the promoter architecture of co-expressed genes in Arabidopsis thaliana.

López Y, Patil A, Nakai K. López Y, et al. Among authors: patil a. BMC Syst Biol. 2013 Oct 16;7 Suppl 3(Suppl 3):S10. doi: 10.1186/1752-0509-7-S3-S10. BMC Syst Biol. 2013. PMID: 24555803 Free PMC article.

5

TimeXNet Web: identifying cellular response networks from diverse omics time-course data.

Tan PL, López Y, Nakai K, Patil A. Tan PL, et al. Among authors: patil a. Bioinformatics. 2018 Nov 1;34(21):3764-3765. doi: 10.1093/bioinformatics/bty393. Bioinformatics. 2018. PMID: 29762638 Free article.

6

Innate immunity interactome dynamics.

Elzawahry A, Patil A, Kumagai Y, Suzuki Y, Nakai K. Elzawahry A, et al. Among authors: patil a. Gene Regul Syst Bio. 2014 Jan 6;8:1-15. doi: 10.4137/GRSB.S12850. eCollection 2014 Jan 6. Gene Regul Syst Bio. 2014. PMID: 24453478 Free PMC article.

7

Discovery of Intermediary Genes between Pathways Using Sparse Regression.

Liang KC, Patil A, Nakai K. Liang KC, et al. Among authors: patil a. PLoS One. 2015 Sep 8;10(9):e0137222. doi: 10.1371/journal.pone.0137222. eCollection 2015. PLoS One. 2015. PMID: 26348038 Free PMC article.

8

HitPredict version 4: comprehensive reliability scoring of physical protein-protein interactions from more than 100 species.

López Y, Nakai K, Patil A. López Y, et al. Among authors: patil a. Database (Oxford). 2015 Dec 26;2015:bav117. doi: 10.1093/database/bav117. Print 2015. Database (Oxford). 2015. PMID: 26708988 Free PMC article.

9

HitPredict: a database of quality assessed protein-protein interactions in nine species.

Patil A, Nakai K, Nakamura H. Patil A, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D744-9. doi: 10.1093/nar/gkq897. Epub 2010 Oct 14. Nucleic Acids Res. 2011. PMID: 20947562 Free PMC article.

10

Functional annotation of intrinsically disordered domains by their amino acid content using IDD Navigator.

Patil A, Teraguchi S, Dinh H, Nakai K, Standley DM. Patil A, et al. Pac Symp Biocomput. 2012:164-75. Pac Symp Biocomput. 2012. PMID: 22174272 Free article.

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