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A draft map of the human proteome.
Kim MS, Pinto SM, Getnet D, Nirujogi RS, Manda SS, Chaerkady R, Madugundu AK, Kelkar DS, Isserlin R, Jain S, Thomas JK, Muthusamy B, Leal-Rojas P, Kumar P, Sahasrabuddhe NA, Balakrishnan L, Advani J, George B, Renuse S, Selvan LD, Patil AH, Nanjappa V, Radhakrishnan A, Prasad S, Subbannayya T, Raju R, Kumar M, Sreenivasamurthy SK, Marimuthu A, Sathe GJ, Chavan S, Datta KK, Subbannayya Y, Sahu A, Yelamanchi SD, Jayaram S, Rajagopalan P, Sharma J, Murthy KR, Syed N, Goel R, Khan AA, Ahmad S, Dey G, Mudgal K, Chatterjee A, Huang TC, Zhong J, Wu X, Shaw PG, Freed D, Zahari MS, Mukherjee KK, Shankar S, Mahadevan A, Lam H, Mitchell CJ, Shankar SK, Satishchandra P, Schroeder JT, Sirdeshmukh R, Maitra A, Leach SD, Drake CG, Halushka MK, Prasad TS, Hruban RH, Kerr CL, Bader GD, Iacobuzio-Donahue CA, Gowda H, Pandey A. Kim MS, et al. Nature. 2014 May 29;509(7502):575-81. doi: 10.1038/nature13302. Nature. 2014. PMID: 24870542 Free PMC article.
Proteomic analysis of human vitreous humor.
Murthy KR, Goel R, Subbannayya Y, Jacob HK, Murthy PR, Manda SS, Patil AH, Sharma R, Sahasrabuddhe NA, Parashar A, Nair BG, Krishna V, Prasad TK, Gowda H, Pandey A. Murthy KR, et al. Clin Proteomics. 2014 Jul 14;11(1):29. doi: 10.1186/1559-0275-11-29. eCollection 2014. Clin Proteomics. 2014. PMID: 25097467 Free PMC article.
Quantitative phosphoproteomic analysis of IL-33-mediated signaling.
Pinto SM, Nirujogi RS, Rojas PL, Patil AH, Manda SS, Subbannayya Y, Roa JC, Chatterjee A, Prasad TS, Pandey A. Pinto SM, et al. Proteomics. 2015 Jan;15(2-3):532-44. doi: 10.1002/pmic.201400303. Proteomics. 2015. PMID: 25367039 Free PMC article.
A proteomic map of the unsequenced kala-azar vector Phlebotomus papatasi using cell line.
Pawar H, Chavan S, Mahale K, Khobragade S, Kulkarni A, Patil A, Chaphekar D, Varriar P, Sudeep A, Pai K, Prasad TSK, Gowda H, Patole MS. Pawar H, et al. Acta Trop. 2015 Dec;152:80-89. doi: 10.1016/j.actatropica.2015.08.012. Epub 2015 Aug 22. Acta Trop. 2015. PMID: 26307495
Macrophage migration inhibitory factor - a therapeutic target in gallbladder cancer.
Subbannayya T, Leal-Rojas P, Barbhuiya MA, Raja R, Renuse S, Sathe G, Pinto SM, Syed N, Nanjappa V, Patil AH, Garcia P, Sahasrabuddhe NA, Nair B, Guerrero-Preston R, Navani S, Tiwari PK, Santosh V, Sidransky D, Prasad TS, Gowda H, Roa JC, Pandey A, Chatterjee A. Subbannayya T, et al. BMC Cancer. 2015 Nov 4;15:843. doi: 10.1186/s12885-015-1855-z. BMC Cancer. 2015. PMID: 26530123 Free PMC article.
Proteogenomics of Candida tropicalis--An Opportunistic Pathogen with Importance for Global Health.
Datta KK, Patil AH, Patel K, Dey G, Madugundu AK, Renuse S, Kaviyil JE, Sekhar R, Arunima A, Daswani B, Kaur I, Mohanty J, Sinha R, Jaiswal S, Sivapriya S, Sonnathi Y, Chattoo BB, Gowda H, Ravikumar R, Prasad TS. Datta KK, et al. OMICS. 2016 Apr;20(4):239-47. doi: 10.1089/omi.2015.0197. OMICS. 2016. PMID: 27093108 Free PMC article.
Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes.
Prasad TS, Mohanty AK, Kumar M, Sreenivasamurthy SK, Dey G, Nirujogi RS, Pinto SM, Madugundu AK, Patil AH, Advani J, Manda SS, Gupta MK, Dwivedi SB, Kelkar DS, Hall B, Jiang X, Peery A, Rajagopalan P, Yelamanchi SD, Solanki HS, Raja R, Sathe GJ, Chavan S, Verma R, Patel KM, Jain AP, Syed N, Datta KK, Khan AA, Dammalli M, Jayaram S, Radhakrishnan A, Mitchell CJ, Na CH, Kumar N, Sinnis P, Sharakhov IV, Wang C, Gowda H, Tu Z, Kumar A, Pandey A. Prasad TS, et al. Genome Res. 2017 Jan;27(1):133-144. doi: 10.1101/gr.201368.115. Epub 2016 Nov 15. Genome Res. 2017. PMID: 28003436 Free PMC article.
Quantitative Proteomic and Phosphoproteomic Analysis of H37Ra and H37Rv Strains of Mycobacterium tuberculosis.
Verma R, Pinto SM, Patil AH, Advani J, Subba P, Kumar M, Sharma J, Dey G, Ravikumar R, Buggi S, Satishchandra P, Sharma K, Suar M, Tripathy SP, Chauhan DS, Gowda H, Pandey A, Gandotra S, Prasad TS. Verma R, et al. J Proteome Res. 2017 Apr 7;16(4):1632-1645. doi: 10.1021/acs.jproteome.6b00983. Epub 2017 Mar 20. J Proteome Res. 2017. PMID: 28241730
Long-Term Cigarette Smoke Exposure and Changes in MiRNA Expression and Proteome in Non-Small-Cell Lung Cancer.
Advani J, Subbannayya Y, Patel K, Khan AA, Patil AH, Jain AP, Solanki HS, Radhakrishnan A, Pinto SM, Sahasrabuddhe NA, Thomas JK, Mathur PP, Nair BG, Chang X, Prasad TSK, Sidransky D, Gowda H, Chatterjee A. Advani J, et al. OMICS. 2017 Jul;21(7):390-403. doi: 10.1089/omi.2017.0045. OMICS. 2017. PMID: 28692419 Free PMC article.
Mosquito-Borne Diseases and Omics: Tissue-Restricted Expression and Alternative Splicing Revealed by Transcriptome Profiling of Anopheles stephensi.
Sreenivasamurthy SK, Madugundu AK, Patil AH, Dey G, Mohanty AK, Kumar M, Patel K, Wang C, Kumar A, Pandey A, Prasad TSK. Sreenivasamurthy SK, et al. OMICS. 2017 Aug;21(8):488-497. doi: 10.1089/omi.2017.0073. Epub 2017 Jul 14. OMICS. 2017. PMID: 28708456
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