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EMDB Web Resources.
Abbott S, Iudin A, Korir PK, Somasundharam S, Patwardhan A. Abbott S, et al. Among authors: patwardhan a. Curr Protoc Bioinformatics. 2018 Mar;61(1):5.10.1-5.10.12. doi: 10.1002/cpbi.48. Epub 2018 Apr 9. Curr Protoc Bioinformatics. 2018. PMID: 30008982 Free PMC article.
PDBe: Protein Data Bank in Europe.
Gutmanas A, Alhroub Y, Battle GM, Berrisford JM, Bochet E, Conroy MJ, Dana JM, Fernandez Montecelo MA, van Ginkel G, Gore SP, Haslam P, Hatherley R, Hendrickx PM, Hirshberg M, Lagerstedt I, Mir S, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Rinaldi L, Sahni G, Sanz-García E, Sen S, Slowley RA, Velankar S, Wainwright ME, Kleywegt GJ. Gutmanas A, et al. Among authors: patwardhan a. Nucleic Acids Res. 2014 Jan;42(Database issue):D285-91. doi: 10.1093/nar/gkt1180. Epub 2013 Nov 27. Nucleic Acids Res. 2014. PMID: 24288376 Free PMC article.
PDBe: improved accessibility of macromolecular structure data from PDB and EMDB.
Velankar S, van Ginkel G, Alhroub Y, Battle GM, Berrisford JM, Conroy MJ, Dana JM, Gore SP, Gutmanas A, Haslam P, Hendrickx PM, Lagerstedt I, Mir S, Fernandez Montecelo MA, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Sanz-García E, Sen S, Slowley RA, Wainwright ME, Deshpande MS, Iudin A, Sahni G, Salavert Torres J, Hirshberg M, Mak L, Nadzirin N, Armstrong DR, Clark AR, Smart OS, Korir PK, Kleywegt GJ. Velankar S, et al. Among authors: patwardhan a. Nucleic Acids Res. 2016 Jan 4;44(D1):D385-95. doi: 10.1093/nar/gkv1047. Epub 2015 Oct 17. Nucleic Acids Res. 2016. PMID: 26476444 Free PMC article.
EMDataBank unified data resource for 3DEM.
Lawson CL, Patwardhan A, Baker ML, Hryc C, Garcia ES, Hudson BP, Lagerstedt I, Ludtke SJ, Pintilie G, Sala R, Westbrook JD, Berman HM, Kleywegt GJ, Chiu W. Lawson CL, et al. Among authors: patwardhan a. Nucleic Acids Res. 2016 Jan 4;44(D1):D396-403. doi: 10.1093/nar/gkv1126. Epub 2015 Nov 17. Nucleic Acids Res. 2016. PMID: 26578576 Free PMC article.
The Electron Microscopy eXchange (EMX) initiative.
Marabini R, Ludtke SJ, Murray SC, Chiu W, de la Rosa-Trevín JM, Patwardhan A, Heymann JB, Carazo JM. Marabini R, et al. Among authors: patwardhan a. J Struct Biol. 2016 May;194(2):156-63. doi: 10.1016/j.jsb.2016.02.008. Epub 2016 Feb 9. J Struct Biol. 2016. PMID: 26873784 Free PMC article.
Web-based volume slicer for 3D electron-microscopy data from EMDB.
Salavert-Torres J, Iudin A, Lagerstedt I, Sanz-García E, Kleywegt GJ, Patwardhan A. Salavert-Torres J, et al. Among authors: patwardhan a. J Struct Biol. 2016 May;194(2):164-70. doi: 10.1016/j.jsb.2016.02.012. Epub 2016 Feb 10. J Struct Biol. 2016. PMID: 26876163 Free PMC article.
EMPIAR: a public archive for raw electron microscopy image data.
Iudin A, Korir PK, Salavert-Torres J, Kleywegt GJ, Patwardhan A. Iudin A, et al. Among authors: patwardhan a. Nat Methods. 2016 May;13(5):387-8. doi: 10.1038/nmeth.3806. Epub 2016 Mar 21. Nat Methods. 2016. PMID: 27067018 No abstract available.
Databases and Archiving for CryoEM.
Patwardhan A, Lawson CL. Patwardhan A, et al. Methods Enzymol. 2016;579:393-412. doi: 10.1016/bs.mie.2016.04.015. Epub 2016 Jun 16. Methods Enzymol. 2016. PMID: 27572735 Free PMC article. Review.
565 results