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Year Number of Results
2002 2
2003 4
2004 1
2005 4
2006 3
2007 1
2008 1
2009 2
2010 4
2011 4
2012 3
2013 7
2014 4
2015 7
2016 10
2017 7
2018 6
2019 8
2020 11
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2022 15
2023 7
2024 6
2025 11
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120 results

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Page 1
A frameshift in time.
Yordanova MM, Baranov PV. Yordanova MM, et al. Among authors: baranov pv. Elife. 2022 Apr 11;11:e78373. doi: 10.7554/eLife.78373. Elife. 2022. PMID: 35404784 Free PMC article.
Translon: a single term for translated regions.
Świrski MI, Tierney JAS, Albà MM, Andreev DE, Aspden JL, Atkins JF, Bassani-Sternberg M, Berry MJ, Biffo S, Boris-Lawrie K, Borodovsky M, Brierley I, Brook M, Brunet MA, Bujnicki JM, Caliskan N, Calviello L, Carvunis AR, Cate JHD, Cenik C, Chang KY, Chen Y, Chothani S, Choudhary JS, Clark PL, Clauwaert J, Cooley L, Dassi E, Dean K, Diaz JJ, Dieterich C, Dikstein R, Dinman JD, Dmitriev SE, Dontsova OA, Dunham CM, Eswarappa SM, Farabaugh PJ, Faridi P, Fierro-Monti I, Firth AE, Gatfield D, Gebauer F, Gelfand MS, Gray NK, Green R, Hill CH, Hou YM, Hübner N, Ignatova Z, Ivanov P, Iwasaki S, Johnson R, Jomaa A, Jovanovic M, Jungreis I, Kellis M, Kieft JS, Kochetov AV, Koonin EV, Korostelev AA, Kufel J, Kulakovskiy IV, Kurian L, Lafontaine DLJ, Larsson O, Loughran G, Lukeš J, Mariotti M, Martens-Uzunova ES, Martinez TF, Matsumoto A, McManus J, Medenbach J, Melnikov SV, Menschaert G, Merchante C, Mikl M, Miller WA, Mühlemann O, Namy O, Nedialkova DD, Nosek J, Orchard S, Ozretić P, Pertea M, Pervouchine DD, Romão L, Ron D, Roucou X, Rubtsova MP, Ruiz-Orera J, Saghatelian A, Salzberg SL, Seale LA, Seoighe C, Sergiev PV, Shah P, Shirokikh N, Slavoff SA, Sonenberg N, Stasevich TJ, Szczesny RJ… See abstract for full author list ➔ Świrski MI, et al. Among authors: baranov pv. Nat Methods. 2025 Oct;22(10):2002-2006. doi: 10.1038/s41592-025-02810-3. Nat Methods. 2025. PMID: 40890551 No abstract available.
The GWIPS-viz Browser.
Kiniry SJ, Michel AM, Baranov PV. Kiniry SJ, et al. Among authors: baranov pv. Curr Protoc Bioinformatics. 2018 Jun;62(1):e50. doi: 10.1002/cpbi.50. Epub 2018 May 16. Curr Protoc Bioinformatics. 2018. PMID: 29927076
Non-AUG translation initiation in mammals.
Andreev DE, Loughran G, Fedorova AD, Mikhaylova MS, Shatsky IN, Baranov PV. Andreev DE, et al. Among authors: baranov pv. Genome Biol. 2022 May 9;23(1):111. doi: 10.1186/s13059-022-02674-2. Genome Biol. 2022. PMID: 35534899 Free PMC article. Review.
RECODE 2003.
Baranov PV, Gurvich OL, Hammer AW, Gesteland RF, Atkins JF. Baranov PV, et al. Nucleic Acids Res. 2003 Jan 1;31(1):87-9. doi: 10.1093/nar/gkg024. Nucleic Acids Res. 2003. PMID: 12519954 Free PMC article.
GWIPS-viz: 2018 update.
Michel AM, Kiniry SJ, O'Connor PBF, Mullan JP, Baranov PV. Michel AM, et al. Among authors: baranov pv. Nucleic Acids Res. 2018 Jan 4;46(D1):D823-D830. doi: 10.1093/nar/gkx790. Nucleic Acids Res. 2018. PMID: 28977460 Free PMC article.
Standardized annotation of translated open reading frames.
Mudge JM, Ruiz-Orera J, Prensner JR, Brunet MA, Calvet F, Jungreis I, Gonzalez JM, Magrane M, Martinez TF, Schulz JF, Yang YT, Albà MM, Aspden JL, Baranov PV, Bazzini AA, Bruford E, Martin MJ, Calviello L, Carvunis AR, Chen J, Couso JP, Deutsch EW, Flicek P, Frankish A, Gerstein M, Hubner N, Ingolia NT, Kellis M, Menschaert G, Moritz RL, Ohler U, Roucou X, Saghatelian A, Weissman JS, van Heesch S. Mudge JM, et al. Among authors: baranov pv. Nat Biotechnol. 2022 Jul;40(7):994-999. doi: 10.1038/s41587-022-01369-0. Nat Biotechnol. 2022. PMID: 35831657 Free PMC article. No abstract available.
Triple coding in human SRD5A1 mRNA.
Yordanova MM, Slattery C, Baranova-Gurvich M, Engels M, Ting O, Świrski M, Tierney JAS, Tjeldnes H, Mudge J, Loughran G, Andreev DE, Baranov PV. Yordanova MM, et al. Among authors: baranov pv. Res Sq [Preprint]. 2024 Dec 19:rs.3.rs-5390104. doi: 10.21203/rs.3.rs-5390104/v1. Res Sq. 2024. PMID: 39764142 Free PMC article. Preprint.
eIF2α controls memory consolidation via excitatory and somatostatin neurons.
Sharma V, Sood R, Khlaifia A, Eslamizade MJ, Hung TY, Lou D, Asgarihafshejani A, Lalzar M, Kiniry SJ, Stokes MP, Cohen N, Nelson AJ, Abell K, Possemato AP, Gal-Ben-Ari S, Truong VT, Wang P, Yiannakas A, Saffarzadeh F, Cuello AC, Nader K, Kaufman RJ, Costa-Mattioli M, Baranov PV, Quintana A, Sanz E, Khoutorsky A, Lacaille JC, Rosenblum K, Sonenberg N. Sharma V, et al. Among authors: baranov pv. Nature. 2020 Oct;586(7829):412-416. doi: 10.1038/s41586-020-2805-8. Epub 2020 Oct 7. Nature. 2020. PMID: 33029011 Free PMC article.
Detection of human unannotated microproteins by mass spectrometry-based proteomics: a community assessment.
Wacholder A, Deutsch EW, Kok LW, van Dinter JT, Lee J, Wright JC, Leblanc S, Jayatissa AH, Jiang K, Arefiev I, Cao K, Bourassa F, Trifiro FA, Bassani-Sternberg M, Baranov PV, Bogaert A, Chothani S, Fierro-Monti I, Fijalkowska D, Gevaert K, Hubner N, Mudge JM, Ruiz-Orera J, Schulz J, Vizcaíno JA, Prensner JR, Brunet MA, Martinez TF, Slavoff SA, Roucou X, Choudhary JS, van Heesch S, Moritz RL, Carvunis AR. Wacholder A, et al. Among authors: baranov pv. bioRxiv [Preprint]. 2025 Jul 27:2025.02.19.639069. doi: 10.1101/2025.02.19.639069. bioRxiv. 2025. Update in: Nat Commun. 2026 Jan 21;17(1):1241. doi: 10.1038/s41467-025-68002-x. PMID: 40027765 Free PMC article. Updated. Preprint.
120 results