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Co-evolution and co-adaptation in protein networks.
Juan D, Pazos F, Valencia A. Juan D, et al. Among authors: pazos f. FEBS Lett. 2008 Apr 9;582(8):1225-30. doi: 10.1016/j.febslet.2008.02.017. Epub 2008 Feb 20. FEBS Lett. 2008. PMID: 18282476 Review.
WeReview: CRISPR Tools-Live Repository of Computational Tools for Assisting CRISPR/Cas Experiments.
Torres-Perez R, Garcia-Martin JA, Montoliu L, Oliveros JC, Pazos F. Torres-Perez R, et al. Among authors: pazos f. Bioengineering (Basel). 2019 Jul 25;6(3):63. doi: 10.3390/bioengineering6030063. Bioengineering (Basel). 2019. PMID: 31349743 Free PMC article.
Prediction of protein--protein interaction sites in heterocomplexes with neural networks.
Fariselli P, Pazos F, Valencia A, Casadio R. Fariselli P, et al. Among authors: pazos f. Eur J Biochem. 2002 Mar;269(5):1356-61. doi: 10.1046/j.1432-1033.2002.02767.x. Eur J Biochem. 2002. PMID: 11874449
In silico two-hybrid system for the selection of physically interacting protein pairs.
Pazos F, Valencia A. Pazos F, et al. Proteins. 2002 May 1;47(2):219-27. doi: 10.1002/prot.10074. Proteins. 2002. PMID: 11933068
Computational methods for the prediction of protein interactions.
Valencia A, Pazos F. Valencia A, et al. Among authors: pazos f. Curr Opin Struct Biol. 2002 Jun;12(3):368-73. doi: 10.1016/s0959-440x(02)00333-0. Curr Opin Struct Biol. 2002. PMID: 12127457 Review.
Automatic methods for predicting functionally important residues.
del Sol A, Pazos F, Valencia A. del Sol A, et al. Among authors: pazos f. J Mol Biol. 2003 Feb 28;326(4):1289-302. doi: 10.1016/s0022-2836(02)01451-1. J Mol Biol. 2003. PMID: 12589769
Prediction of protein-protein interactions from evolutionary information.
Valencia A, Pazos F. Valencia A, et al. Among authors: pazos f. Methods Biochem Anal. 2003;44:411-26. Methods Biochem Anal. 2003. PMID: 12647397 Review. No abstract available.
Automated prediction of protein function and detection of functional sites from structure.
Pazos F, Sternberg MJ. Pazos F, et al. Proc Natl Acad Sci U S A. 2004 Oct 12;101(41):14754-9. doi: 10.1073/pnas.0404569101. Epub 2004 Sep 29. Proc Natl Acad Sci U S A. 2004. PMID: 15456910 Free PMC article.
Assessing protein co-evolution in the context of the tree of life assists in the prediction of the interactome.
Pazos F, Ranea JA, Juan D, Sternberg MJ. Pazos F, et al. J Mol Biol. 2005 Sep 30;352(4):1002-15. doi: 10.1016/j.jmb.2005.07.005. J Mol Biol. 2005. PMID: 16139301
The proteome: structure, function and evolution.
Fleming K, Kelley LA, Islam SA, MacCallum RM, Muller A, Pazos F, Sternberg MJ. Fleming K, et al. Among authors: pazos f. Philos Trans R Soc Lond B Biol Sci. 2006 Mar 29;361(1467):441-51. doi: 10.1098/rstb.2005.1802. Philos Trans R Soc Lond B Biol Sci. 2006. PMID: 16524832 Free PMC article. Review.
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