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84 results
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Using Bayesian networks to analyze expression data.
Friedman N, Linial M, Nachman I, Pe'er D. Friedman N, et al. J Comput Biol. 2000;7(3-4):601-20. doi: 10.1089/106652700750050961. J Comput Biol. 2000. PMID: 11108481
Learning signaling network structures with sparsely distributed data.
Sachs K, Itani S, Carlisle J, Nolan GP, Pe'er D, Lauffenburger DA. Sachs K, et al. J Comput Biol. 2009 Feb;16(2):201-12. doi: 10.1089/cmb.2008.07TT. J Comput Biol. 2009. PMID: 19193145 Free PMC article.
Causal protein-signaling networks derived from multiparameter single-cell data.
Sachs K, Perez O, Pe'er D, Lauffenburger DA, Nolan GP. Sachs K, et al. Science. 2005 Apr 22;308(5721):523-9. doi: 10.1126/science.1105809. Science. 2005. PMID: 15845847
Bayesian network analysis of signaling networks: a primer.
Pe'er D. Pe'er D. Sci STKE. 2005 Apr 26;2005(281):pl4. doi: 10.1126/stke.2812005pl4. Sci STKE. 2005. PMID: 15855409 Review.
Recovering Gene Interactions from Single-Cell Data Using Data Diffusion.
van Dijk D, Sharma R, Nainys J, Yim K, Kathail P, Carr AJ, Burdziak C, Moon KR, Chaffer CL, Pattabiraman D, Bierie B, Mazutis L, Wolf G, Krishnaswamy S, Pe'er D. van Dijk D, et al. Cell. 2018 Jul 26;174(3):716-729.e27. doi: 10.1016/j.cell.2018.05.061. Epub 2018 Jun 28. Cell. 2018. PMID: 29961576 Free PMC article.
Integration of genomic data enables selective discovery of breast cancer drivers.
Sanchez-Garcia F, Villagrasa P, Matsui J, Kotliar D, Castro V, Akavia UD, Chen BJ, Saucedo-Cuevas L, Rodriguez Barrueco R, Llobet-Navas D, Silva JM, Pe'er D. Sanchez-Garcia F, et al. Cell. 2014 Dec 4;159(6):1461-75. doi: 10.1016/j.cell.2014.10.048. Epub 2014 Nov 26. Cell. 2014. PMID: 25433701 Free PMC article.
Principles and strategies for developing network models in cancer.
Pe'er D, Hacohen N. Pe'er D, et al. Cell. 2011 Mar 18;144(6):864-73. doi: 10.1016/j.cell.2011.03.001. Cell. 2011. PMID: 21414479 Free PMC article.
An integrated approach to uncover drivers of cancer.
Akavia UD, Litvin O, Kim J, Sanchez-Garcia F, Kotliar D, Causton HC, Pochanard P, Mozes E, Garraway LA, Pe'er D. Akavia UD, et al. Cell. 2010 Dec 10;143(6):1005-17. doi: 10.1016/j.cell.2010.11.013. Epub 2010 Dec 2. Cell. 2010. PMID: 21129771 Free PMC article.
Harnessing gene expression to identify the genetic basis of drug resistance.
Chen BJ, Causton HC, Mancenido D, Goddard NL, Perlstein EO, Pe'er D. Chen BJ, et al. Mol Syst Biol. 2009;5:310. doi: 10.1038/msb.2009.69. Epub 2009 Oct 13. Mol Syst Biol. 2009. PMID: 19888205 Free PMC article.
Learning a prior on regulatory potential from eQTL data.
Lee SI, Dudley AM, Drubin D, Silver PA, Krogan NJ, Pe'er D, Koller D. Lee SI, et al. PLoS Genet. 2009 Jan;5(1):e1000358. doi: 10.1371/journal.pgen.1000358. Epub 2009 Jan 30. PLoS Genet. 2009. PMID: 19180192 Free PMC article.
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