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1,552 results
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Defining and predicting structurally conserved regions in protein superfamilies.
Huang IK, Pei J, Grishin NV. Huang IK, et al. Among authors: pei j. Bioinformatics. 2013 Jan 15;29(2):175-81. doi: 10.1093/bioinformatics/bts682. Epub 2012 Nov 28. Bioinformatics. 2013. PMID: 23193223 Free PMC article.
AL2CO: calculation of positional conservation in a protein sequence alignment.
Pei J, Grishin NV. Pei J, et al. Bioinformatics. 2001 Aug;17(8):700-12. doi: 10.1093/bioinformatics/17.8.700. Bioinformatics. 2001. PMID: 11524371
PCMA: fast and accurate multiple sequence alignment based on profile consistency.
Pei J, Sadreyev R, Grishin NV. Pei J, et al. Bioinformatics. 2003 Feb 12;19(3):427-8. doi: 10.1093/bioinformatics/btg008. Bioinformatics. 2003. PMID: 12584134
Reconstruction of ancestral protein sequences and its applications.
Cai W, Pei J, Grishin NV. Cai W, et al. Among authors: pei j. BMC Evol Biol. 2004 Sep 17;4:33. doi: 10.1186/1471-2148-4-33. BMC Evol Biol. 2004. PMID: 15377393 Free PMC article.
Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.
Pei J, Cai W, Kinch LN, Grishin NV. Pei J, et al. Bioinformatics. 2006 Jan 15;22(2):164-71. doi: 10.1093/bioinformatics/bti766. Epub 2005 Nov 8. Bioinformatics. 2006. PMID: 16278237
MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information.
Pei J, Grishin NV. Pei J, et al. Nucleic Acids Res. 2006;34(16):4364-74. doi: 10.1093/nar/gkl514. Epub 2006 Aug 26. Nucleic Acids Res. 2006. PMID: 16936316 Free PMC article.
PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
Pei J, Grishin NV. Pei J, et al. Bioinformatics. 2007 Apr 1;23(7):802-8. doi: 10.1093/bioinformatics/btm017. Epub 2007 Jan 31. Bioinformatics. 2007. PMID: 17267437
PROMALS3D: a tool for multiple protein sequence and structure alignments.
Pei J, Kim BH, Grishin NV. Pei J, et al. Nucleic Acids Res. 2008 Apr;36(7):2295-300. doi: 10.1093/nar/gkn072. Epub 2008 Feb 20. Nucleic Acids Res. 2008. PMID: 18287115 Free PMC article.
Multiple protein sequence alignment.
Pei J. Pei J. Curr Opin Struct Biol. 2008 Jun;18(3):382-6. doi: 10.1016/j.sbi.2008.03.007. Epub 2008 May 14. Curr Opin Struct Biol. 2008. PMID: 18485694 Review.
PROMALS3D web server for accurate multiple protein sequence and structure alignments.
Pei J, Tang M, Grishin NV. Pei J, et al. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W30-4. doi: 10.1093/nar/gkn322. Epub 2008 May 24. Nucleic Acids Res. 2008. PMID: 18503087 Free PMC article.
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