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simuPOP: a forward-time population genetics simulation environment.
Peng B, Kimmel M. Peng B, et al. Bioinformatics. 2005 Sep 15;21(18):3686-7. doi: 10.1093/bioinformatics/bti584. Epub 2005 Jul 14. Bioinformatics. 2005. PMID: 16020469
Simulating sequences of the human genome with rare variants.
Peng B, Liu X. Peng B, et al. Hum Hered. 2010;70(4):287-91. doi: 10.1159/000323316. Epub 2011 Jan 6. Hum Hered. 2010. PMID: 21212684 Free PMC article.
Forward-time simulation of realistic samples for genome-wide association studies.
Peng B, Amos CI. Peng B, et al. BMC Bioinformatics. 2010 Sep 1;11:442. doi: 10.1186/1471-2105-11-442. BMC Bioinformatics. 2010. PMID: 20809983 Free PMC article.
Simulating gene-environment interactions in complex human diseases.
Peng B. Peng B. Genome Med. 2010 Mar 23;2(3):21. doi: 10.1186/gm142. Genome Med. 2010. PMID: 20346093 Free PMC article.
Forward-time simulations of non-random mating populations using simuPOP.
Peng B, Amos CI. Peng B, et al. Bioinformatics. 2008 Jun 1;24(11):1408-9. doi: 10.1093/bioinformatics/btn179. Epub 2008 Apr 15. Bioinformatics. 2008. PMID: 18417488 Free PMC article.
Simulations provide support for the common disease-common variant hypothesis.
Peng B, Kimmel M. Peng B, et al. Genetics. 2007 Feb;175(2):763-76. doi: 10.1534/genetics.106.058164. Epub 2006 Dec 6. Genetics. 2007. PMID: 17151262 Free PMC article.
Power analysis and sample size estimation for sequence-based association studies.
Wang GT, Li B, Santos-Cortez RP, Peng B, Leal SM. Wang GT, et al. Bioinformatics. 2014 Aug 15;30(16):2377-8. doi: 10.1093/bioinformatics/btu296. Epub 2014 Apr 28. Bioinformatics. 2014. PMID: 24778108 Free PMC article.
Genetic Simulation Resources: a website for the registration and discovery of genetic data simulators.
Peng B, Chen HS, Mechanic LE, Racine B, Clarke J, Clarke L, Gillanders E, Feuer EJ. Peng B, et al. Bioinformatics. 2013 Apr 15;29(8):1101-2. doi: 10.1093/bioinformatics/btt094. Epub 2013 Feb 23. Bioinformatics. 2013. PMID: 23435068 Free PMC article.
Derived SNP alleles are used more frequently than ancestral alleles as risk-associated variants in common human diseases.
Gorlova OY, Ying J, Amos CI, Spitz MR, Peng B, Gorlov IP. Gorlova OY, et al. J Bioinform Comput Biol. 2012 Apr;10(2):1241008. doi: 10.1142/S0219720012410089. J Bioinform Comput Biol. 2012. PMID: 22809343 Free PMC article.
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