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10,797 results
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Improving chemical disease relation extraction with rich features and weakly labeled data.
Peng Y, Wei CH, Lu Z. Peng Y, et al. J Cheminform. 2016 Oct 7;8:53. doi: 10.1186/s13321-016-0165-z. eCollection 2016. J Cheminform. 2016. PMID: 28316651 Free PMC article.
BioC: a minimalist approach to interoperability for biomedical text processing.
Comeau DC, Islamaj Doğan R, Ciccarese P, Cohen KB, Krallinger M, Leitner F, Lu Z, Peng Y, Rinaldi F, Torii M, Valencia A, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ. Comeau DC, et al. Among authors: peng y. Database (Oxford). 2013 Sep 18;2013:bat064. doi: 10.1093/database/bat064. Print 2013. Database (Oxford). 2013. PMID: 24048470 Free PMC article.
iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system.
Peng Y, Tudor CO, Torii M, Wu CH, Vijay-Shanker K. Peng Y, et al. Database (Oxford). 2014 May 21;2014:bau038. doi: 10.1093/database/bau038. Print 2014. Database (Oxford). 2014. PMID: 24850848 Free PMC article.
BioC interoperability track overview.
Comeau DC, Batista-Navarro RT, Dai HJ, Doğan RI, Yepes AJ, Khare R, Lu Z, Marques H, Mattingly CJ, Neves M, Peng Y, Rak R, Rinaldi F, Tsai RT, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ. Comeau DC, et al. Among authors: peng y. Database (Oxford). 2014 Jun 30;2014:bau053. doi: 10.1093/database/bau053. Print 2014. Database (Oxford). 2014. PMID: 24980129 Free PMC article. Review.
A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems.
Peng Y, Torii M, Wu CH, Vijay-Shanker K. Peng Y, et al. BMC Bioinformatics. 2014 Aug 23;15(1):285. doi: 10.1186/1471-2105-15-285. BMC Bioinformatics. 2014. PMID: 25149151 Free PMC article.
miRTex: A Text Mining System for miRNA-Gene Relation Extraction.
Li G, Ross KE, Arighi CN, Peng Y, Wu CH, Vijay-Shanker K. Li G, et al. Among authors: peng y. PLoS Comput Biol. 2015 Sep 25;11(9):e1004391. doi: 10.1371/journal.pcbi.1004391. eCollection 2015. PLoS Comput Biol. 2015. PMID: 26407127 Free PMC article.
Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task.
Wei CH, Peng Y, Leaman R, Davis AP, Mattingly CJ, Li J, Wiegers TC, Lu Z. Wei CH, et al. Among authors: peng y. Database (Oxford). 2016 Mar 19;2016:baw032. doi: 10.1093/database/baw032. Print 2016. Database (Oxford). 2016. PMID: 26994911 Free PMC article.
BioC-compatible full-text passage detection for protein-protein interactions using extended dependency graph.
Peng Y, Arighi C, Wu CH, Vijay-Shanker K. Peng Y, et al. Database (Oxford). 2016 May 11;2016:baw072. doi: 10.1093/database/baw072. Print 2016. Database (Oxford). 2016. PMID: 27170286 Free PMC article.
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.
Kim S, Islamaj Doğan R, Chatr-Aryamontri A, Chang CS, Oughtred R, Rust J, Batista-Navarro R, Carter J, Ananiadou S, Matos S, Santos A, Campos D, Oliveira JL, Singh O, Jonnagaddala J, Dai HJ, Su EC, Chang YC, Su YC, Chu CH, Chen CC, Hsu WL, Peng Y, Arighi C, Wu CH, Vijay-Shanker K, Aydın F, Hüsünbeyi ZM, Özgür A, Shin SY, Kwon D, Dolinski K, Tyers M, Wilbur WJ, Comeau DC. Kim S, et al. Among authors: peng y. Database (Oxford). 2016 Sep 1;2016:baw121. doi: 10.1093/database/baw121. Print 2016. Database (Oxford). 2016. PMID: 27589962 Free PMC article.
Opportunities and obstacles for deep learning in biology and medicine.
Ching T, Himmelstein DS, Beaulieu-Jones BK, Kalinin AA, Do BT, Way GP, Ferrero E, Agapow PM, Zietz M, Hoffman MM, Xie W, Rosen GL, Lengerich BJ, Israeli J, Lanchantin J, Woloszynek S, Carpenter AE, Shrikumar A, Xu J, Cofer EM, Lavender CA, Turaga SC, Alexandari AM, Lu Z, Harris DJ, DeCaprio D, Qi Y, Kundaje A, Peng Y, Wiley LK, Segler MHS, Boca SM, Swamidass SJ, Huang A, Gitter A, Greene CS. Ching T, et al. Among authors: peng y. J R Soc Interface. 2018 Apr;15(141):20170387. doi: 10.1098/rsif.2017.0387. J R Soc Interface. 2018. PMID: 29618526 Free PMC article. Review.
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