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Soft sweeps II--molecular population genetics of adaptation from recurrent mutation or migration.
Pennings PS, Hermisson J. Pennings PS, et al. Mol Biol Evol. 2006 May;23(5):1076-84. doi: 10.1093/molbev/msj117. Epub 2006 Mar 6. Mol Biol Evol. 2006. PMID: 16520336
Standing genetic variation and the evolution of drug resistance in HIV.
Pennings PS. Pennings PS. PLoS Comput Biol. 2012;8(6):e1002527. doi: 10.1371/journal.pcbi.1002527. Epub 2012 Jun 7. PLoS Comput Biol. 2012. PMID: 22685388 Free PMC article.
Soft Selective Sweeps in Evolutionary Rescue.
Wilson BA, Pennings PS, Petrov DA. Wilson BA, et al. Among authors: pennings ps. Genetics. 2017 Apr;205(4):1573-1586. doi: 10.1534/genetics.116.191478. Epub 2017 Feb 17. Genetics. 2017. PMID: 28213477 Free PMC article.
The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens.
Wilson BA, Garud NR, Feder AF, Assaf ZJ, Pennings PS. Wilson BA, et al. Among authors: pennings ps. Mol Ecol. 2016 Jan;25(1):42-66. doi: 10.1111/mec.13474. Epub 2015 Dec 17. Mol Ecol. 2016. PMID: 26578204 Free PMC article. Review.
Genetic diversity, population structure and sex-biased dispersal in three co-evolving species.
Foitzik S, Bauer S, Laurent S, Pennings PS. Foitzik S, et al. Among authors: pennings ps. J Evol Biol. 2009 Dec;22(12):2470-80. doi: 10.1111/j.1420-9101.2009.01863.x. Epub 2009 Nov 3. J Evol Biol. 2009. PMID: 19888940
Similar evolutionary potentials in an obligate ant parasite and its two host species.
Pennings PS, Achenbach A, Foitzik S. Pennings PS, et al. J Evol Biol. 2011 Apr;24(4):871-86. doi: 10.1111/j.1420-9101.2010.02223.x. Epub 2011 Feb 16. J Evol Biol. 2011. PMID: 21324025 Free PMC article.
HIV-1 transmission networks in a small world.
Pennings PS, Holmes SP, Shafer RW. Pennings PS, et al. J Infect Dis. 2014 Jan 15;209(2):180-2. doi: 10.1093/infdis/jit525. Epub 2013 Oct 22. J Infect Dis. 2014. PMID: 24151310 Free PMC article. No abstract available.
Evidence of adaptation from ancestral variation in young populations of beach mice.
Domingues VS, Poh YP, Peterson BK, Pennings PS, Jensen JD, Hoekstra HE. Domingues VS, et al. Among authors: pennings ps. Evolution. 2012 Oct;66(10):3209-23. doi: 10.1111/j.1558-5646.2012.01669.x. Epub 2012 May 4. Evolution. 2012. PMID: 23025610
Loss and recovery of genetic diversity in adapting populations of HIV.
Pennings PS, Kryazhimskiy S, Wakeley J. Pennings PS, et al. PLoS Genet. 2014 Jan;10(1):e1004000. doi: 10.1371/journal.pgen.1004000. Epub 2014 Jan 23. PLoS Genet. 2014. PMID: 24465214 Free PMC article.
An analytically tractable model for competitive speciation.
Pennings PS, Kopp M, Meszéna G, Dieckmann U, Hermisson J. Pennings PS, et al. Am Nat. 2008 Jan;171(1):E44-71. doi: 10.1086/523952. Am Nat. 2008. PMID: 18171142
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