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Soft sweeps III: the signature of positive selection from recurrent mutation.
Pennings PS, Hermisson J. Pennings PS, et al. PLoS Genet. 2006 Dec 15;2(12):e186. doi: 10.1371/journal.pgen.0020186. Epub 2006 Sep 14. PLoS Genet. 2006. PMID: 17173482 Free PMC article.
Standing genetic variation and the evolution of drug resistance in HIV.
Pennings PS. Pennings PS. PLoS Comput Biol. 2012;8(6):e1002527. doi: 10.1371/journal.pcbi.1002527. Epub 2012 Jun 7. PLoS Comput Biol. 2012. PMID: 22685388 Free PMC article.
Soft Selective Sweeps in Evolutionary Rescue.
Wilson BA, Pennings PS, Petrov DA. Wilson BA, et al. Genetics. 2017 Apr;205(4):1573-1586. doi: 10.1534/genetics.116.191478. Epub 2017 Feb 17. Genetics. 2017. PMID: 28213477 Free PMC article.
Similar evolutionary potentials in an obligate ant parasite and its two host species.
Pennings PS, Achenbach A, Foitzik S. Pennings PS, et al. J Evol Biol. 2011 Apr;24(4):871-86. doi: 10.1111/j.1420-9101.2010.02223.x. Epub 2011 Feb 16. J Evol Biol. 2011. PMID: 21324025 Free PMC article.
HIV-1 transmission networks in a small world.
Pennings PS, Holmes SP, Shafer RW. Pennings PS, et al. J Infect Dis. 2014 Jan 15;209(2):180-2. doi: 10.1093/infdis/jit525. Epub 2013 Oct 22. J Infect Dis. 2014. PMID: 24151310 Free PMC article. No abstract available.
Evidence of adaptation from ancestral variation in young populations of beach mice.
Domingues VS, Poh YP, Peterson BK, Pennings PS, Jensen JD, Hoekstra HE. Domingues VS, et al. Evolution. 2012 Oct;66(10):3209-23. doi: 10.1111/j.1558-5646.2012.01669.x. Epub 2012 May 4. Evolution. 2012. PMID: 23025610
Loss and recovery of genetic diversity in adapting populations of HIV.
Pennings PS, Kryazhimskiy S, Wakeley J. Pennings PS, et al. PLoS Genet. 2014 Jan;10(1):e1004000. doi: 10.1371/journal.pgen.1004000. Epub 2014 Jan 23. PLoS Genet. 2014. PMID: 24465214 Free PMC article.
An analytically tractable model for competitive speciation.
Pennings PS, Kopp M, Meszéna G, Dieckmann U, Hermisson J. Pennings PS, et al. Am Nat. 2008 Jan;171(1):E44-71. doi: 10.1086/523952. Am Nat. 2008. PMID: 18171142
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