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The path from the RNA world.
Poole AM, Jeffares DC, Penny D. Poole AM, et al. J Mol Evol. 1998 Jan;46(1):1-17. doi: 10.1007/pl00006275. J Mol Evol. 1998. PMID: 9419221 Review.
Progress with methods for constructing evolutionary trees.
Penny D, Hendy MD, Steel MA. Penny D, et al. Trends Ecol Evol. 1992 Mar;7(3):73-9. doi: 10.1016/0169-5347(92)90244-6. Trends Ecol Evol. 1992. PMID: 21235960
A frequency-dependent significance test for parsimony.
Steel M, Lockhart PJ, Penny D. Steel M, et al. Mol Phylogenet Evol. 1995 Mar;4(1):64-71. doi: 10.1006/mpev.1995.1006. Mol Phylogenet Evol. 1995. PMID: 7620636
Use of spectral analysis to test hypotheses on the origin of pinnipeds.
Lento GM, Hickson RE, Chambers GK, Penny D. Lento GM, et al. Mol Biol Evol. 1995 Jan;12(1):28-52. doi: 10.1093/oxfordjournals.molbev.a040189. Mol Biol Evol. 1995. PMID: 7877495
We inferred phylogenetic reconstructions from DNA sequence data using standard parsimony and neighbor-joining algorithms for phylogenetic inference as well as a new method called spectral analysis (Hendy and Penny) in which phylogenetic information is displayed independent …
We inferred phylogenetic reconstructions from DNA sequence data using standard parsimony and neighbor-joining algorithms for phylogenetic in …
The MinMax Squeeze: guaranteeing a minimal tree for population data.
Holland BR, Huber KT, Penny D, Moulton V. Holland BR, et al. Mol Biol Evol. 2005 Feb;22(2):235-42. doi: 10.1093/molbev/msi010. Epub 2004 Oct 13. Mol Biol Evol. 2005. PMID: 15483326
Early evolution: prokaryotes, the new kids on the block.
Poole A, Jeffares D, Penny D. Poole A, et al. Bioessays. 1999 Oct;21(10):880-9. doi: 10.1002/(SICI)1521-1878(199910)21:10<880::AID-BIES11>3.0.CO;2-P. Bioessays. 1999. PMID: 10497339 Review.
Relics from the RNA world.
Jeffares DC, Poole AM, Penny D. Jeffares DC, et al. J Mol Evol. 1998 Jan;46(1):18-36. doi: 10.1007/pl00006280. J Mol Evol. 1998. PMID: 9419222 Review.
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