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Genomic evolution in a virus under specific selection for host recognition.
Pepin KM, Domsic J, McKenna R. Pepin KM, et al. Infect Genet Evol. 2008 Dec;8(6):825-34. doi: 10.1016/j.meegid.2008.08.008. Epub 2008 Aug 28. Infect Genet Evol. 2008. PMID: 18804189
Dos and don'ts of testing the geographic mosaic theory of coevolution.
Gomulkiewicz R, Drown DM, Dybdahl MF, Godsoe W, Nuismer SL, Pepin KM, Ridenhour BJ, Smith CI, Yoder JB. Gomulkiewicz R, et al. Heredity (Edinb). 2007 May;98(5):249-58. doi: 10.1038/sj.hdy.6800949. Epub 2007 Mar 7. Heredity (Edinb). 2007. PMID: 17344805 Review.
Phenotypic differences in viral immune escape explained by linking within-host dynamics to host-population immunity.
Pepin KM, Volkov I, Banavar JR, Wilke CO, Grenfell BT. Pepin KM, et al. J Theor Biol. 2010 Aug 21;265(4):501-10. doi: 10.1016/j.jtbi.2010.05.036. Epub 2010 Jun 4. J Theor Biol. 2010. PMID: 20570681 Free PMC article.
Identifying genetic markers of adaptation for surveillance of viral host jumps.
Pepin KM, Lass S, Pulliam JR, Read AF, Lloyd-Smith JO. Pepin KM, et al. Nat Rev Microbiol. 2010 Nov;8(11):802-13. doi: 10.1038/nrmicro2440. Epub 2010 Oct 12. Nat Rev Microbiol. 2010. PMID: 20938453 Free PMC article. Review.
Asymmetric competitive suppression between strains of dengue virus.
Pepin KM, Lambeth K, Hanley KA. Pepin KM, et al. BMC Microbiol. 2008 Feb 8;8:28. doi: 10.1186/1471-2180-8-28. BMC Microbiol. 2008. PMID: 18261207 Free PMC article.
Using quantitative disease dynamics as a tool for guiding response to avian influenza in poultry in the United States of America.
Pepin KM, Spackman E, Brown JD, Pabilonia KL, Garber LP, Weaver JT, Kennedy DA, Patyk KA, Huyvaert KP, Miller RS, Franklin AB, Pedersen K, Bogich TL, Rohani P, Shriner SA, Webb CT, Riley S. Pepin KM, et al. Prev Vet Med. 2014 Mar 1;113(4):376-97. doi: 10.1016/j.prevetmed.2013.11.011. Epub 2013 Dec 1. Prev Vet Med. 2014. PMID: 24462191 Free PMC article. Review.
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