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The Ypt/Rab family and the evolution of trafficking in fungi.
Pereira-Leal JB. Pereira-Leal JB. Traffic. 2008 Jan;9(1):27-38. doi: 10.1111/j.1600-0854.2007.00667.x. Epub 2007 Nov 27. Traffic. 2008. PMID: 17973655
Rabifier2: an improved bioinformatic classifier of Rab GTPases.
Surkont J, Diekmann Y, Pereira-Leal JB. Surkont J, et al. Bioinformatics. 2017 Feb 15;33(4):568-570. doi: 10.1093/bioinformatics/btw654. Bioinformatics. 2017. PMID: 27797763
Genetic Competence Drives Genome Diversity in Bacillus subtilis.
Brito PH, Chevreux B, Serra CR, Schyns G, Henriques AO, Pereira-Leal JB. Brito PH, et al. Among authors: pereira leal jb. Genome Biol Evol. 2018 Jan 1;10(1):108-124. doi: 10.1093/gbe/evx270. Genome Biol Evol. 2018. PMID: 29272410 Free PMC article.
Evolutionary patterns in coiled-coils.
Surkont J, Pereira-Leal JB. Surkont J, et al. Genome Biol Evol. 2015 Jan 10;7(2):545-56. doi: 10.1093/gbe/evv007. Genome Biol Evol. 2015. PMID: 25577198 Free PMC article.
A genomic signature and the identification of new sporulation genes.
Abecasis AB, Serrano M, Alves R, Quintais L, Pereira-Leal JB, Henriques AO. Abecasis AB, et al. J Bacteriol. 2013 May;195(9):2101-15. doi: 10.1128/JB.02110-12. Epub 2013 Feb 8. J Bacteriol. 2013. PMID: 23396918 Free PMC article.
Evolution of intracellular compartmentalization.
Diekmann Y, Pereira-Leal JB. Diekmann Y, et al. Biochem J. 2013 Jan 15;449(2):319-31. doi: 10.1042/BJ20120957. Biochem J. 2013. PMID: 23240612 Review.
Thousands of rab GTPases for the cell biologist.
Diekmann Y, Seixas E, Gouw M, Tavares-Cadete F, Seabra MC, Pereira-Leal JB. Diekmann Y, et al. PLoS Comput Biol. 2011 Oct;7(10):e1002217. doi: 10.1371/journal.pcbi.1002217. Epub 2011 Oct 13. PLoS Comput Biol. 2011. PMID: 22022256 Free PMC article.
Evolution: Tracing the origins of centrioles, cilia, and flagella.
Carvalho-Santos Z, Azimzadeh J, Pereira-Leal JB, Bettencourt-Dias M. Carvalho-Santos Z, et al. J Cell Biol. 2011 Jul 25;194(2):165-75. doi: 10.1083/jcb.201011152. J Cell Biol. 2011. PMID: 21788366 Free PMC article. Review.
Loss of genetic redundancy in reductive genome evolution.
Mendonça AG, Alves RJ, Pereira-Leal JB. Mendonça AG, et al. PLoS Comput Biol. 2011 Feb;7(2):e1001082. doi: 10.1371/journal.pcbi.1001082. Epub 2011 Feb 17. PLoS Comput Biol. 2011. PMID: 21379323 Free PMC article.
Stepwise evolution of the centriole-assembly pathway.
Carvalho-Santos Z, Machado P, Branco P, Tavares-Cadete F, Rodrigues-Martins A, Pereira-Leal JB, Bettencourt-Dias M. Carvalho-Santos Z, et al. J Cell Sci. 2010 May 1;123(Pt 9):1414-26. doi: 10.1242/jcs.064931. Epub 2010 Apr 14. J Cell Sci. 2010. PMID: 20392737
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