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Tailoring a Global Iron Regulon to a Uropathogen.
Banerjee R, Weisenhorn E, Schwartz KJ, Myers KS, Glasner JD, Perna NT, Coon JJ, Welch RA, Kiley PJ. Banerjee R, et al. Among authors: perna nt. mBio. 2020 Mar 24;11(2):e00351-20. doi: 10.1128/mBio.00351-20. mBio. 2020. PMID: 32209682 Free PMC article.
Complete Genome Sequence of Dickeya dianthicola ME23, a Pathogen Causing Blackleg and Soft Rot Diseases of Potato.
Ma X, Perna NT, Glasner JD, Hao J, Johnson S, Nasaruddin AS, Charkowski AO, Wu S, Fei Z, Perry KL, Stodghill P, Swingle B. Ma X, et al. Among authors: perna nt. Microbiol Resour Announc. 2019 Feb 14;8(7):e01526-18. doi: 10.1128/MRA.01526-18. eCollection 2019 Feb. Microbiol Resour Announc. 2019. PMID: 30801063 Free PMC article.
Sepsis and Hemocyte Loss in Honey Bees (Apis mellifera) Infected with Serratia marcescens Strain Sicaria.
Burritt NL, Foss NJ, Neeno-Eckwall EC, Church JO, Hilger AM, Hildebrand JA, Warshauer DM, Perna NT, Burritt JB. Burritt NL, et al. Among authors: perna nt. PLoS One. 2016 Dec 21;11(12):e0167752. doi: 10.1371/journal.pone.0167752. eCollection 2016. PLoS One. 2016. PMID: 28002470 Free PMC article.
The Enterobacterium Trabulsiella odontotermitis Presents Novel Adaptations Related to Its Association with Fungus-Growing Termites.
Sapountzis P, Gruntjes T, Otani S, Estevez J, da Costa RR, Plunkett G 3rd, Perna NT, Poulsen M. Sapountzis P, et al. Among authors: perna nt. Appl Environ Microbiol. 2015 Oct;81(19):6577-88. doi: 10.1128/AEM.01844-15. Epub 2015 Jul 10. Appl Environ Microbiol. 2015. PMID: 26162887 Free PMC article.
Identification of host-microbe interaction factors in the genomes of soft rot-associated pathogens Dickeya dadantii 3937 and Pectobacterium carotovorum WPP14 with supervised machine learning.
Ma B, Charkowski AO, Glasner JD, Perna NT. Ma B, et al. Among authors: perna nt. BMC Genomics. 2014 Jun 21;15:508. doi: 10.1186/1471-2164-15-508. BMC Genomics. 2014. PMID: 24952641 Free PMC article.
Evolution of extreme resistance to ionizing radiation via genetic adaptation of DNA repair.
Byrne RT, Klingele AJ, Cabot EL, Schackwitz WS, Martin JA, Martin J, Wang Z, Wood EA, Pennacchio C, Pennacchio LA, Perna NT, Battista JR, Cox MM. Byrne RT, et al. Among authors: perna nt. Elife. 2014 Mar 4;3:e01322. doi: 10.7554/eLife.01322. Elife. 2014. PMID: 24596148 Free PMC article.
Computing the joint distribution of tree shape and tree distance for gene tree inference and recombination detection.
Chung Y, Perna NT, Ané C. Chung Y, et al. Among authors: perna nt. IEEE/ACM Trans Comput Biol Bioinform. 2013 Sep-Oct;10(5):1263-74. doi: 10.1109/TCBB.2013.109. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 24384712
Transcriptome changes associated with anaerobic growth in Yersinia intermedia (ATCC29909).
Babujee L, Balakrishnan V, Kiley PJ, Glasner JD, Perna NT. Babujee L, et al. Among authors: perna nt. PLoS One. 2013 Oct 7;8(10):e76567. doi: 10.1371/journal.pone.0076567. eCollection 2013. PLoS One. 2013. PMID: 24116118 Free PMC article.
Inferring ancient metabolism using ancestral core metabolic models of enterobacteria.
Baumler DJ, Ma B, Reed JL, Perna NT. Baumler DJ, et al. Among authors: perna nt. BMC Syst Biol. 2013 Jun 11;7:46. doi: 10.1186/1752-0509-7-46. BMC Syst Biol. 2013. PMID: 23758866 Free PMC article.
Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation.
Broadbent JR, Neeno-Eckwall EC, Stahl B, Tandee K, Cai H, Morovic W, Horvath P, Heidenreich J, Perna NT, Barrangou R, Steele JL. Broadbent JR, et al. Among authors: perna nt. BMC Genomics. 2012 Oct 5;13:533. doi: 10.1186/1471-2164-13-533. BMC Genomics. 2012. PMID: 23035691 Free PMC article.
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