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Page 1
Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937.
Glasner JD, Yang CH, Reverchon S, Hugouvieux-Cotte-Pattat N, Condemine G, Bohin JP, Van Gijsegem F, Yang S, Franza T, Expert D, Plunkett G 3rd, San Francisco MJ, Charkowski AO, Py B, Bell K, Rauscher L, Rodriguez-Palenzuela P, Toussaint A, Holeva MC, He SY, Douet V, Boccara M, Blanco C, Toth I, Anderson BD, Biehl BS, Mau B, Flynn SM, Barras F, Lindeberg M, Birch PR, Tsuyumu S, Shi X, Hibbing M, Yap MN, Carpentier M, Dassa E, Umehara M, Kim JF, Rusch M, Soni P, Mayhew GF, Fouts DE, Gill SR, Blattner FR, Keen NT, Perna NT. Glasner JD, et al. Among authors: perna nt. J Bacteriol. 2011 Apr;193(8):2076-7. doi: 10.1128/JB.01513-10. Epub 2011 Jan 7. J Bacteriol. 2011. PMID: 21217001 Free PMC article.
Genome sequence of Yersinia pestis KIM.
Deng W, Burland V, Plunkett G 3rd, Boutin A, Mayhew GF, Liss P, Perna NT, Rose DJ, Mau B, Zhou S, Schwartz DC, Fetherston JD, Lindler LE, Brubaker RR, Plano GV, Straley SC, McDonough KA, Nilles ML, Matson JS, Blattner FR, Perry RD. Deng W, et al. Among authors: perna nt. J Bacteriol. 2002 Aug;184(16):4601-11. doi: 10.1128/JB.184.16.4601-4611.2002. J Bacteriol. 2002. PMID: 12142430 Free PMC article.
The role of secretion systems and small molecules in soft-rot Enterobacteriaceae pathogenicity.
Charkowski A, Blanco C, Condemine G, Expert D, Franza T, Hayes C, Hugouvieux-Cotte-Pattat N, López Solanilla E, Low D, Moleleki L, Pirhonen M, Pitman A, Perna N, Reverchon S, Rodríguez Palenzuela P, San Francisco M, Toth I, Tsuyumu S, van der Waals J, van der Wolf J, Van Gijsegem F, Yang CH, Yedidia I. Charkowski A, et al. Annu Rev Phytopathol. 2012;50:425-49. doi: 10.1146/annurev-phyto-081211-173013. Epub 2012 Jun 12. Annu Rev Phytopathol. 2012. PMID: 22702350 Review.
GRIL: genome rearrangement and inversion locator.
Darling AE, Mau B, Blattner FR, Perna NT. Darling AE, et al. Among authors: perna nt. Bioinformatics. 2004 Jan 1;20(1):122-4. doi: 10.1093/bioinformatics/btg378. Bioinformatics. 2004. PMID: 14693819
Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria.
Glasner JD, Plunkett G 3rd, Anderson BD, Baumler DJ, Biehl BS, Burland V, Cabot EL, Darling AE, Mau B, Neeno-Eckwall EC, Pot D, Qiu Y, Rissman AI, Worzella S, Zaremba S, Fedorko J, Hampton T, Liss P, Rusch M, Shaker M, Shaull L, Shetty P, Thotakura S, Whitmore J, Blattner FR, Greene JM, Perna NT. Glasner JD, et al. Among authors: perna nt. Nucleic Acids Res. 2008 Jan;36(Database issue):D519-23. doi: 10.1093/nar/gkm973. Epub 2007 Nov 13. Nucleic Acids Res. 2008. PMID: 17999997 Free PMC article.
Reordering contigs of draft genomes using the Mauve aligner.
Rissman AI, Mau B, Biehl BS, Darling AE, Glasner JD, Perna NT. Rissman AI, et al. Among authors: perna nt. Bioinformatics. 2009 Aug 15;25(16):2071-3. doi: 10.1093/bioinformatics/btp356. Epub 2009 Jun 10. Bioinformatics. 2009. PMID: 19515959 Free PMC article.
65 results