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Manure Microbial Communities and Resistance Profiles Reconfigure after Transition to Manure Pits and Differ from Those in Fertilized Field Soil.
Sukhum KV, Vargas RC, Boolchandani M, D'Souza AW, Patel S, Kesaraju A, Walljasper G, Hegde H, Ye Z, Valenzuela RK, Gunderson P, Bendixsen C, Dantas G, Shukla SK. Sukhum KV, et al. mBio. 2021 May 11;12(3):e00798-21. doi: 10.1128/mBio.00798-21. mBio. 2021. PMID: 33975936 Free PMC article.
We used a combination of shotgun metagenomic sequencing and functional metagenomics to quantitatively interrogate taxonomic and ARG compositional variation on farms. We found that as the microbiome transitions from fresh dairy cow manure to manure pits, microbial taxonomic …
We used a combination of shotgun metagenomic sequencing and functional metagenomics to quantitatively interrogate taxonomic and ARG composit …
A repository of microbial marker genes related to human health and diseases for host phenotype prediction using microbiome data.
Han W, Ye Y. Han W, et al. Pac Symp Biocomput. 2019;24:236-247. Pac Symp Biocomput. 2019. PMID: 30864326 Free PMC article.
The microbiome research is going through an evolutionary transition from focusing on the characterization of reference microbiomes associated with different environments/hosts to the translational applications, including using microbiome for disease di …
The microbiome research is going through an evolutionary transition from focusing on the characterization of reference micr