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SVM²: an improved paired-end-based tool for the detection of small genomic structural variations using high-throughput single-genome resequencing data.
Chiara M, Pesole G, Horner DS. Chiara M, et al. Among authors: pesole g. Nucleic Acids Res. 2012 Oct;40(18):e145. doi: 10.1093/nar/gks606. Epub 2012 Jun 25. Nucleic Acids Res. 2012. PMID: 22735696 Free PMC article.
A backtranslation method based on codon usage strategy.
Pesole G, Attimonelli M, Liuni S. Pesole G, et al. Nucleic Acids Res. 1988 Mar 11;16(5):1715-28. doi: 10.1093/nar/16.5.1715. Nucleic Acids Res. 1988. PMID: 3281142 Free PMC article.
MERGE: a software package for generating a single data-base starting from EMBL and GenBank collections.
Attimonelli M, Lanave C, Liuni S, Pesole G. Attimonelli M, et al. Among authors: pesole g. Nucleic Acids Res. 1988 Mar 11;16(5):1681-2. doi: 10.1093/nar/16.5.1681. Nucleic Acids Res. 1988. PMID: 3353218 Free PMC article. No abstract available.
MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins.
Pesole G, Gissi C, Catalano D, Grillo G, Licciulli F, Liuni S, Attimonelli M, Saccone C. Pesole G, et al. Nucleic Acids Res. 2000 Jan 1;28(1):163-5. doi: 10.1093/nar/28.1.163. Nucleic Acids Res. 2000. PMID: 10592211 Free PMC article.
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs.
Pesole G, Liuni S, Grillo G, Licciulli F, Larizza A, Makalowski W, Saccone C. Pesole G, et al. Nucleic Acids Res. 2000 Jan 1;28(1):193-6. doi: 10.1093/nar/28.1.193. Nucleic Acids Res. 2000. PMID: 10592223 Free PMC article.
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002.
Pesole G, Liuni S, Grillo G, Licciulli F, Mignone F, Gissi C, Saccone C. Pesole G, et al. Nucleic Acids Res. 2002 Jan 1;30(1):335-40. doi: 10.1093/nar/30.1.335. Nucleic Acids Res. 2002. PMID: 11752330 Free PMC article.
Computational identification of protein coding potential of conserved sequence tags through cross-species evolutionary analysis.
Mignone F, Grillo G, Liuni S, Pesole G. Mignone F, et al. Among authors: pesole g. Nucleic Acids Res. 2003 Aug 1;31(15):4639-45. doi: 10.1093/nar/gkg483. Nucleic Acids Res. 2003. PMID: 12888525 Free PMC article.
Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes.
Pavesi G, Mereghetti P, Mauri G, Pesole G. Pavesi G, et al. Among authors: pesole g. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W199-203. doi: 10.1093/nar/gkh465. Nucleic Acids Res. 2004. PMID: 15215380 Free PMC article.
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