Search Page

1

Cite

Share

SignalP 4.0: discriminating signal peptides from transmembrane regions.

Petersen TN, Brunak S, von Heijne G, Nielsen H. Petersen TN, et al. Nat Methods. 2011 Sep 29;8(10):785-6. doi: 10.1038/nmeth.1701. Nat Methods. 2011. PMID: 21959131 No abstract available.

Cite

Share

2

Cite

Share

SignalP 5.0 improves signal peptide predictions using deep neural networks.

Almagro Armenteros JJ, Tsirigos KD, Sønderby CK, Petersen TN, Winther O, Brunak S, von Heijne G, Nielsen H. Almagro Armenteros JJ, et al. Among authors: petersen tn. Nat Biotechnol. 2019 Apr;37(4):420-423. doi: 10.1038/s41587-019-0036-z. Epub 2019 Feb 18. Nat Biotechnol. 2019. PMID: 30778233

Cite

Share

3

Cite

Share

Improved metagenome binning and assembly using deep variational autoencoders.

Nissen JN, Johansen J, Allesøe RL, Sønderby CK, Armenteros JJA, Grønbech CH, Jensen LJ, Nielsen HB, Petersen TN, Winther O, Rasmussen S. Nissen JN, et al. Among authors: petersen tn. Nat Biotechnol. 2021 May;39(5):555-560. doi: 10.1038/s41587-020-00777-4. Epub 2021 Jan 4. Nat Biotechnol. 2021. PMID: 33398153

Cite

Share

4

Cite

Share

NetTurnP--neural network prediction of beta-turns by use of evolutionary information and predicted protein sequence features.

Petersen B, Lundegaard C, Petersen TN. Petersen B, et al. Among authors: petersen tn. PLoS One. 2010 Nov 30;5(11):e15079. doi: 10.1371/journal.pone.0015079. PLoS One. 2010. PMID: 21152409 Free PMC article.

Cite

Share

5

Cite

Share

Prediction of disease causing non-synonymous SNPs by the Artificial Neural Network Predictor NetDiseaseSNP.

Johansen MB, Izarzugaza JM, Brunak S, Petersen TN, Gupta R. Johansen MB, et al. Among authors: petersen tn. PLoS One. 2013 Jul 25;8(7):e68370. doi: 10.1371/journal.pone.0068370. Print 2013. PLoS One. 2013. PMID: 23935863 Free PMC article.

Cite

Share

6

Cite

Share

Cofactory: sequence-based prediction of cofactor specificity of Rossmann folds.

Geertz-Hansen HM, Blom N, Feist AM, Brunak S, Petersen TN. Geertz-Hansen HM, et al. Among authors: petersen tn. Proteins. 2014 Sep;82(9):1819-28. doi: 10.1002/prot.24536. Epub 2014 Mar 20. Proteins. 2014. PMID: 24523134

Cite

Share

7

Cite

Share

Protein features as determinants of wild-type glycoside hydrolase thermostability.

Geertz-Hansen HM, Kiemer L, Nielsen M, Stanchev K, Blom N, Brunak S, Petersen TN. Geertz-Hansen HM, et al. Among authors: petersen tn. Proteins. 2017 Nov;85(11):2036-2044. doi: 10.1002/prot.25357. Epub 2017 Aug 10. Proteins. 2017. PMID: 28734034 Free article.

Cite

Share

8

Cite

Share

Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries.

Munk P, Knudsen BE, Lukjancenko O, Duarte ASR, Van Gompel L, Luiken REC, Smit LAM, Schmitt H, Garcia AD, Hansen RB, Petersen TN, Bossers A, Ruppé E; EFFORT Group, Lund O, Hald T, Pamp SJ, Vigre H, Heederik D, Wagenaar JA, Mevius D, Aarestrup FM. Munk P, et al. Among authors: petersen tn. Nat Microbiol. 2018 Aug;3(8):898-908. doi: 10.1038/s41564-018-0192-9. Epub 2018 Jul 23. Nat Microbiol. 2018. PMID: 30038308

Cite

Share

9

Cite

Share

Author Correction: Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries.

Munk P, Knudsen BE, Lukjancenko O, Duarte ASR, Van Gompel L, Luiken REC, Smit LAM, Schmitt H, Garcia AD, Hansen RB, Petersen TN, Bossers A, Ruppé E, Lund O, Hald T, Pamp SJ, Vigre H, Heederik D, Wagenaar JA, Mevius D, Aarestrup FM; EFFORT Group. Munk P, et al. Among authors: petersen tn. Nat Microbiol. 2018 Oct;3(10):1186. doi: 10.1038/s41564-018-0241-4. Nat Microbiol. 2018. PMID: 30131524

Cite

Share

10

Cite

Share

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage.

Hendriksen RS, Munk P, Njage P, van Bunnik B, McNally L, Lukjancenko O, Röder T, Nieuwenhuijse D, Pedersen SK, Kjeldgaard J, Kaas RS, Clausen PTLC, Vogt JK, Leekitcharoenphon P, van de Schans MGM, Zuidema T, de Roda Husman AM, Rasmussen S, Petersen B; Global Sewage Surveillance project consortium, Amid C, Cochrane G, Sicheritz-Ponten T, Schmitt H, Alvarez JRM, Aidara-Kane A, Pamp SJ, Lund O, Hald T, Woolhouse M, Koopmans MP, Vigre H, Petersen TN, Aarestrup FM. Hendriksen RS, et al. Among authors: petersen tn. Nat Commun. 2019 Mar 8;10(1):1124. doi: 10.1038/s41467-019-08853-3. Nat Commun. 2019. PMID: 30850636 Free PMC article.

Cite

Share