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WD40 proteins propel cellular networks.
Stirnimann CU, Petsalaki E, Russell RB, Müller CW. Stirnimann CU, et al. Among authors: petsalaki e. Trends Biochem Sci. 2010 Oct;35(10):565-74. doi: 10.1016/j.tibs.2010.04.003. Epub 2010 May 5. Trends Biochem Sci. 2010. PMID: 20451393 Review.
The identification of short linear motif-mediated interfaces within the human interactome.
Weatheritt RJ, Luck K, Petsalaki E, Davey NE, Gibson TJ. Weatheritt RJ, et al. Among authors: petsalaki e. Bioinformatics. 2012 Apr 1;28(7):976-82. doi: 10.1093/bioinformatics/bts072. Epub 2012 Feb 10. Bioinformatics. 2012. PMID: 22328783 Free PMC article.
PepSite: prediction of peptide-binding sites from protein surfaces.
Trabuco LG, Lise S, Petsalaki E, Russell RB. Trabuco LG, et al. Among authors: petsalaki e. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W423-7. doi: 10.1093/nar/gks398. Epub 2012 May 16. Nucleic Acids Res. 2012. PMID: 22600738 Free PMC article.
Peptide-mediated interactions in biological systems: new discoveries and applications.
Petsalaki E, Russell RB. Petsalaki E, et al. Curr Opin Biotechnol. 2008 Aug;19(4):344-50. doi: 10.1016/j.copbio.2008.06.004. Epub 2008 Jul 12. Curr Opin Biotechnol. 2008. PMID: 18602004
Accurate prediction of peptide binding sites on protein surfaces.
Petsalaki E, Stark A, García-Urdiales E, Russell RB. Petsalaki E, et al. PLoS Comput Biol. 2009 Mar;5(3):e1000335. doi: 10.1371/journal.pcbi.1000335. Epub 2009 Mar 27. PLoS Comput Biol. 2009. PMID: 19325869 Free PMC article.
Systematic identification of phosphorylation-mediated protein interaction switches.
Betts MJ, Wichmann O, Utz M, Andre T, Petsalaki E, Minguez P, Parca L, Roth FP, Gavin AC, Bork P, Russell RB. Betts MJ, et al. Among authors: petsalaki e. PLoS Comput Biol. 2017 Mar 27;13(3):e1005462. doi: 10.1371/journal.pcbi.1005462. eCollection 2017 Mar. PLoS Comput Biol. 2017. PMID: 28346509 Free PMC article.
SELPHI: correlation-based identification of kinase-associated networks from global phospho-proteomics data sets.
Petsalaki E, Helbig AO, Gopal A, Pasculescu A, Roth FP, Pawson T. Petsalaki E, et al. Nucleic Acids Res. 2015 Jul 1;43(W1):W276-82. doi: 10.1093/nar/gkv459. Epub 2015 May 6. Nucleic Acids Res. 2015. PMID: 25948583 Free PMC article.
Protein domain-level landscape of cancer-type-specific somatic mutations.
Yang F, Petsalaki E, Rolland T, Hill DE, Vidal M, Roth FP. Yang F, et al. Among authors: petsalaki e. PLoS Comput Biol. 2015 Mar 20;11(3):e1004147. doi: 10.1371/journal.pcbi.1004147. eCollection 2015 Mar. PLoS Comput Biol. 2015. PMID: 25794154 Free PMC article.
PredSL: a tool for the N-terminal sequence-based prediction of protein subcellular localization.
Petsalaki EI, Bagos PG, Litou ZI, Hamodrakas SJ. Petsalaki EI, et al. Genomics Proteomics Bioinformatics. 2006 Feb;4(1):48-55. doi: 10.1016/S1672-0229(06)60016-8. Genomics Proteomics Bioinformatics. 2006. PMID: 16689702 Free PMC article.
Allosteric Modulation of Binding Specificity by Alternative Packing of Protein Cores.
Ben-David M, Huang H, Sun MGF, Corbi-Verge C, Petsalaki E, Liu K, Gfeller D, Garg P, Tempel W, Sochirca I, Shifman JM, Davidson A, Min J, Kim PM, Sidhu SS. Ben-David M, et al. Among authors: petsalaki e. J Mol Biol. 2019 Jan 18;431(2):336-350. doi: 10.1016/j.jmb.2018.11.018. Epub 2018 Nov 22. J Mol Biol. 2019. PMID: 30471255
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