Pisabarro MT - Search Results

1

Identification and characterization of a glycosaminoglycan binding site on interleukin-10 via molecular simulation methods.

Gehrcke JP, Pisabarro MT. Gehrcke JP, et al. Among authors: pisabarro mt. J Mol Graph Model. 2015 Nov;62:97-104. doi: 10.1016/j.jmgm.2015.09.003. Epub 2015 Sep 8. J Mol Graph Model. 2015. PMID: 26409190 Free article.

2

Studies on the inference of protein binding regions across fold space based on structural similarities.

Teyra J, Hawkins J, Zhu H, Pisabarro MT. Teyra J, et al. Among authors: pisabarro mt. Proteins. 2011 Feb;79(2):499-508. doi: 10.1002/prot.22897. Proteins. 2011. PMID: 21069715

3

Identification of CCR2-binding features in Cytl1 by a CCL2-like chemokine model.

Tomczak A, Pisabarro MT. Tomczak A, et al. Among authors: pisabarro mt. Proteins. 2011 Apr;79(4):1277-92. doi: 10.1002/prot.22963. Epub 2011 Feb 14. Proteins. 2011. PMID: 21322034

4

Docking glycosaminoglycans to proteins: analysis of solvent inclusion.

Samsonov SA, Teyra J, Pisabarro MT. Samsonov SA, et al. Among authors: pisabarro mt. J Comput Aided Mol Des. 2011 May;25(5):477-89. doi: 10.1007/s10822-011-9433-1. Epub 2011 May 20. J Comput Aided Mol Des. 2011. PMID: 21597992 Free PMC article.

5

SCOWLP update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds.

Teyra J, Samsonov SA, Schreiber S, Pisabarro MT. Teyra J, et al. Among authors: pisabarro mt. BMC Bioinformatics. 2011 Oct 13;12:398. doi: 10.1186/1471-2105-12-398. BMC Bioinformatics. 2011. PMID: 21992011 Free PMC article.

6

Binding of chondroitin 4-sulfate to cathepsin S regulates its enzymatic activity.

Sage J, Mallèvre F, Barbarin-Costes F, Samsonov SA, Gehrcke JP, Pisabarro MT, Perrier E, Schnebert S, Roget A, Livache T, Nizard C, Lalmanach G, Lecaille F. Sage J, et al. Among authors: pisabarro mt. Biochemistry. 2013 Sep 17;52(37):6487-98. doi: 10.1021/bi400925g. Epub 2013 Sep 4. Biochemistry. 2013. PMID: 23968158

7

Flexibility and explicit solvent in molecular-dynamics-based docking of protein-glycosaminoglycan systems.

Samsonov SA, Gehrcke JP, Pisabarro MT. Samsonov SA, et al. Among authors: pisabarro mt. J Chem Inf Model. 2014 Feb 24;54(2):582-92. doi: 10.1021/ci4006047. Epub 2014 Feb 12. J Chem Inf Model. 2014. PMID: 24479827

8

Multipose binding in molecular docking.

Atkovska K, Samsonov SA, Paszkowski-Rogacz M, Pisabarro MT. Atkovska K, et al. Among authors: pisabarro mt. Int J Mol Sci. 2014 Feb 14;15(2):2622-45. doi: 10.3390/ijms15022622. Int J Mol Sci. 2014. PMID: 24534807 Free PMC article.

9

Glycosaminoglycan monosaccharide blocks analysis by quantum mechanics, molecular dynamics, and nuclear magnetic resonance.

Samsonov SA, Theisgen S, Riemer T, Huster D, Pisabarro MT. Samsonov SA, et al. Among authors: pisabarro mt. Biomed Res Int. 2014;2014:808071. doi: 10.1155/2014/808071. Epub 2014 Apr 7. Biomed Res Int. 2014. PMID: 24804247 Free PMC article.

10

NMR characterization of the binding properties and conformation of glycosaminoglycans interacting with interleukin-10.

Künze G, Gehrcke JP, Pisabarro MT, Huster D. Künze G, et al. Among authors: pisabarro mt. Glycobiology. 2014 Nov;24(11):1036-49. doi: 10.1093/glycob/cwu069. Epub 2014 Jul 6. Glycobiology. 2014. PMID: 25002415

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