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Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum.
Plotkin JB, Dushoff J, Fraser HB. Plotkin JB, et al. Nature. 2004 Apr 29;428(6986):942-5. doi: 10.1038/nature02458. Nature. 2004. PMID: 15118727
Assessing the determinants of evolutionary rates in the presence of noise.
Plotkin JB, Fraser HB. Plotkin JB, et al. Mol Biol Evol. 2007 May;24(5):1113-21. doi: 10.1093/molbev/msm044. Epub 2007 Mar 7. Mol Biol Evol. 2007. PMID: 17347158
Tissue-specific codon usage and the expression of human genes.
Plotkin JB, Robins H, Levine AJ. Plotkin JB, et al. Proc Natl Acad Sci U S A. 2004 Aug 24;101(34):12588-91. doi: 10.1073/pnas.0404957101. Epub 2004 Aug 16. Proc Natl Acad Sci U S A. 2004. PMID: 15314228 Free PMC article.
The evolution of syntactic communication.
Nowak MA, Plotkin JB, Jansen VA. Nowak MA, et al. Among authors: plotkin jb. Nature. 2000 Mar 30;404(6777):495-8. doi: 10.1038/35006635. Nature. 2000. PMID: 10761917
Codon bias and frequency-dependent selection on the hemagglutinin epitopes of influenza A virus.
Plotkin JB, Dushoff J. Plotkin JB, et al. Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):7152-7. doi: 10.1073/pnas.1132114100. Epub 2003 May 14. Proc Natl Acad Sci U S A. 2003. PMID: 12748378 Free PMC article.
Species-area curves, spatial aggregation, and habitat specialization in tropical forests.
Plotkin JB, Potts MD, Leslie N, Manokaran N, Lafrankie J, Ashton PS. Plotkin JB, et al. J Theor Biol. 2000 Nov 7;207(1):81-99. doi: 10.1006/jtbi.2000.2158. J Theor Biol. 2000. PMID: 11027481
Language evolution and information theory.
Plotkin JB, Nowak MA. Plotkin JB, et al. J Theor Biol. 2000 Jul 7;205(1):147-59. doi: 10.1006/jtbi.2000.2053. J Theor Biol. 2000. PMID: 10860707
The evolutionary language game.
Nowak MA, Plotkin JB, Krakauer DC. Nowak MA, et al. Among authors: plotkin jb. J Theor Biol. 1999 Sep 21;200(2):147-62. doi: 10.1006/jtbi.1999.0981. J Theor Biol. 1999. PMID: 10504282
Directionality in the evolution of influenza A haemagglutinin.
Kryazhimskiy S, Bazykin GA, Plotkin JB, Dushoff J. Kryazhimskiy S, et al. Among authors: plotkin jb. Proc Biol Sci. 2008 Nov 7;275(1650):2455-64. doi: 10.1098/rspb.2008.0521. Proc Biol Sci. 2008. PMID: 18647721 Free PMC article.
Dynamical resonance can account for seasonality of influenza epidemics.
Dushoff J, Plotkin JB, Levin SA, Earn DJ. Dushoff J, et al. Among authors: plotkin jb. Proc Natl Acad Sci U S A. 2004 Nov 30;101(48):16915-6. doi: 10.1073/pnas.0407293101. Epub 2004 Nov 19. Proc Natl Acad Sci U S A. 2004. PMID: 15557003 Free PMC article.
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