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The population genetics of dN/dS.
Kryazhimskiy S, Plotkin JB. Kryazhimskiy S, et al. Among authors: plotkin jb. PLoS Genet. 2008 Dec;4(12):e1000304. doi: 10.1371/journal.pgen.1000304. Epub 2008 Dec 12. PLoS Genet. 2008. PMID: 19081788 Free PMC article.
Codon usage and selection on proteins.
Plotkin JB, Dushoff J, Desai MM, Fraser HB. Plotkin JB, et al. J Mol Evol. 2006 Nov;63(5):635-53. doi: 10.1007/s00239-005-0233-x. Epub 2006 Oct 14. J Mol Evol. 2006. PMID: 17043750
Genome landscapes and bacteriophage codon usage.
Lucks JB, Nelson DR, Kudla GR, Plotkin JB. Lucks JB, et al. Among authors: plotkin jb. PLoS Comput Biol. 2008 Feb 29;4(2):e1000001. doi: 10.1371/journal.pcbi.1000001. PLoS Comput Biol. 2008. PMID: 18463708 Free PMC article.
Directionality in the evolution of influenza A haemagglutinin.
Kryazhimskiy S, Bazykin GA, Plotkin JB, Dushoff J. Kryazhimskiy S, et al. Among authors: plotkin jb. Proc Biol Sci. 2008 Nov 7;275(1650):2455-64. doi: 10.1098/rspb.2008.0521. Proc Biol Sci. 2008. PMID: 18647721 Free PMC article.
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