Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.


The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

My NCBI Filters
Text availability
Article attribute
Article type
Publication date

Search Results

27 results
Filters applied: . Clear all Results are displayed in a computed author sort order. Results by year timeline is unavailable
Page 1
Analysis pipelines for calcium imaging data.
Pnevmatikakis EA. Pnevmatikakis EA. Curr Opin Neurobiol. 2019 Apr;55:15-21. doi: 10.1016/j.conb.2018.11.004. Epub 2019 Feb 15. Curr Opin Neurobiol. 2019. PMID: 30529147 Free article. Review.
Simultaneous Multi-plane Imaging of Neural Circuits.
Yang W, Miller JE, Carrillo-Reid L, Pnevmatikakis E, Paninski L, Yuste R, Peterka DS. Yang W, et al. Neuron. 2016 Jan 20;89(2):269-84. doi: 10.1016/j.neuron.2015.12.012. Epub 2016 Jan 7. Neuron. 2016. PMID: 26774159 Free PMC article.
Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.
Pnevmatikakis EA, Soudry D, Gao Y, Machado TA, Merel J, Pfau D, Reardon T, Mu Y, Lacefield C, Yang W, Ahrens M, Bruno R, Jessell TM, Peterka DS, Yuste R, Paninski L. Pnevmatikakis EA, et al. Neuron. 2016 Jan 20;89(2):285-99. doi: 10.1016/j.neuron.2015.11.037. Epub 2016 Jan 7. Neuron. 2016. PMID: 26774160 Free PMC article.
CaImAn an open source tool for scalable calcium imaging data analysis.
Giovannucci A, Friedrich J, Gunn P, Kalfon J, Brown BL, Koay SA, Taxidis J, Najafi F, Gauthier JL, Zhou P, Khakh BS, Tank DW, Chklovskii DB, Pnevmatikakis EA. Giovannucci A, et al. Among authors: pnevmatikakis ea. Elife. 2019 Jan 17;8:e38173. doi: 10.7554/eLife.38173. Elife. 2019. PMID: 30652683 Free PMC article.
VolPy: Automated and scalable analysis pipelines for voltage imaging datasets.
Cai C, Friedrich J, Singh A, Eybposh MH, Pnevmatikakis EA, Podgorski K, Giovannucci A. Cai C, et al. Among authors: pnevmatikakis ea. PLoS Comput Biol. 2021 Apr 14;17(4):e1008806. doi: 10.1371/journal.pcbi.1008806. eCollection 2021 Apr. PLoS Comput Biol. 2021. PMID: 33852574 Free PMC article.
Online analysis of microendoscopic 1-photon calcium imaging data streams.
Friedrich J, Giovannucci A, Pnevmatikakis EA. Friedrich J, et al. Among authors: pnevmatikakis ea. PLoS Comput Biol. 2021 Jan 28;17(1):e1008565. doi: 10.1371/journal.pcbi.1008565. eCollection 2021 Jan. PLoS Comput Biol. 2021. PMID: 33507937 Free PMC article.
27 results