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Page 1
Transcriptome and epigenome landscape of human cortical development modeled in organoids.
Amiri A, Coppola G, Scuderi S, Wu F, Roychowdhury T, Liu F, Pochareddy S, Shin Y, Safi A, Song L, Zhu Y, Sousa AMM; PsychENCODE Consortium; Gerstein M, Crawford GE, Sestan N, Abyzov A, Vaccarino FM. Amiri A, et al. Among authors: pochareddy s. Science. 2018 Dec 14;362(6420):eaat6720. doi: 10.1126/science.aat6720. Science. 2018. PMID: 30545853 Free PMC article.
Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder.
Gandal MJ, Zhang P, Hadjimichael E, Walker RL, Chen C, Liu S, Won H, van Bakel H, Varghese M, Wang Y, Shieh AW, Haney J, Parhami S, Belmont J, Kim M, Moran Losada P, Khan Z, Mleczko J, Xia Y, Dai R, Wang D, Yang YT, Xu M, Fish K, Hof PR, Warrell J, Fitzgerald D, White K, Jaffe AE; PsychENCODE Consortium; Peters MA, Gerstein M, Liu C, Iakoucheva LM, Pinto D, Geschwind DH. Gandal MJ, et al. Science. 2018 Dec 14;362(6420):eaat8127. doi: 10.1126/science.aat8127. Science. 2018. PMID: 30545856 Free PMC article.
Single-cell genomics and regulatory networks for 388 human brains.
Emani PS, Liu JJ, Clarke D, Jensen M, Warrell J, Gupta C, Meng R, Lee CY, Xu S, Dursun C, Lou S, Chen Y, Chu Z, Galeev T, Hwang A, Li Y, Ni P, Zhou X; PsychENCODE Consortium‡; Bakken TE, Bendl J, Bicks L, Chatterjee T, Cheng L, Cheng Y, Dai Y, Duan Z, Flaherty M, Fullard JF, Gancz M, Garrido-Martín D, Gaynor-Gillett S, Grundman J, Hawken N, Henry E, Hoffman GE, Huang A, Jiang Y, Jin T, Jorstad NL, Kawaguchi R, Khullar S, Liu J, Liu J, Liu S, Ma S, Margolis M, Mazariegos S, Moore J, Moran JR, Nguyen E, Phalke N, Pjanic M, Pratt H, Quintero D, Rajagopalan AS, Riesenmy TR, Shedd N, Shi M, Spector M, Terwilliger R, Travaglini KJ, Wamsley B, Wang G, Xia Y, Xiao S, Yang AC, Zheng S, Gandal MJ, Lee D, Lein ES, Roussos P, Sestan N, Weng Z, White KP, Won H, Girgenti MJ, Zhang J, Wang D, Geschwind D, Gerstein M; PsychENCODE Consortium. Emani PS, et al. Science. 2024 May 24;384(6698):eadi5199. doi: 10.1126/science.adi5199. Epub 2024 May 24. Science. 2024. PMID: 38781369 Free PMC article.
A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex.
Huuki-Myers LA, Spangler A, Eagles NJ, Montgomery KD, Kwon SH, Guo B, Grant-Peters M, Divecha HR, Tippani M, Sriworarat C, Nguyen AB, Ravichandran P, Tran MN, Seyedian A; PsychENCODE Consortium†; Hyde TM, Kleinman JE, Battle A, Page SC, Ryten M, Hicks SC, Martinowich K, Collado-Torres L, Maynard KR; PsychENCODE Consortium. Huuki-Myers LA, et al. Science. 2024 May 24;384(6698):eadh1938. doi: 10.1126/science.adh1938. Epub 2024 May 24. Science. 2024. PMID: 38781370 Free PMC article.
Single-cell multi-cohort dissection of the schizophrenia transcriptome.
Ruzicka WB, Mohammadi S, Fullard JF, Davila-Velderrain J, Subburaju S, Tso DR, Hourihan M, Jiang S, Lee HC, Bendl J; PsychENCODE Consortium§; Voloudakis G, Haroutunian V, Hoffman GE, Roussos P, Kellis M; PsychENCODE Consortium. Ruzicka WB, et al. Science. 2024 May 24;384(6698):eadg5136. doi: 10.1126/science.adg5136. Epub 2024 May 24. Science. 2024. PMID: 38781388
Massively parallel characterization of regulatory elements in the developing human cortex.
Deng C, Whalen S, Steyert M, Ziffra R, Przytycki PF, Inoue F, Pereira DA, Capauto D, Norton S, Vaccarino FM; PsychENCODE Consortium‡; Pollen AA, Nowakowski TJ, Ahituv N, Pollard KS; PsychENCODE Consortium. Deng C, et al. Science. 2024 May 24;384(6698):eadh0559. doi: 10.1126/science.adh0559. Epub 2024 May 24. Science. 2024. PMID: 38781390 Free PMC article.
Human-specific features of the cerebellum and ZP2-regulated synapse development.
Kim SK, Cherskov A, Sindhwani A, Choi SH, Kim H, Li ML, Zhang M, Mato-Blanco X, Liu Y, Micali N, Young DM, Estacion M, Zhang Y, Ruiz-Jiménez JM, Nadkarni A, Luria V, Sindhu SK, Chatterjee I, Shibata A, Liang D, Cho H, Park S, Spajic A, Kovner R, Glavan M, Chen RJ, Risgaard RD, Li X, Pochareddy S, Karger A, Huttner A, Morozov YM, Daadi EW, Colantuoni C, Gobeske KT, Ely JJ, Hof PR, Daadi MM, Sherwood CC, Duque A, Ma S, Sousa AMM, Waxman SG, Rakic P, Santpere G, Sanders SJ, Sestan N. Kim SK, et al. Among authors: pochareddy s. bioRxiv [Preprint]. 2025 Sep 9:2025.09.08.674970. doi: 10.1101/2025.09.08.674970. bioRxiv. 2025. PMID: 40964325 Free PMC article. Preprint.
Adaptive Evolution of Gene Regulatory Networks in Mammalian Neocortical Neurons.
Li Z, Kaur N, Santpere G, Muchnik SK, Sindhu SK, Qi C, Shibata M, Clément O, Klarić TS, de Martin X, Luria V, Cho H, Li M, Shibata A, Tebbenkamp ATN, Ma S, Han W, Kim SK, Pochareddy S, Duy PQ, Xing X, Bao Y, Xu X, Gladwyn-Ng IE, Cullen HD, Paolino A, Fenlon LR, Kozulin P, Suárez R, Risgaard RD, Gulden FO, Karger A, Suzuki IK, Hirata T, Gobeske KT, Richards LJ, Sousa AMM, Heng JI, Sestan N. Li Z, et al. Among authors: pochareddy s. bioRxiv [Preprint]. 2025 May 21:2025.05.20.652233. doi: 10.1101/2025.05.20.652233. bioRxiv. 2025. PMID: 40475427 Free PMC article. Preprint.
Author Correction: The landscape of somatic mutation in cerebral cortex of autistic and neurotypical individuals revealed by ultra-deep whole-genome sequencing.
Rodin RE, Dou Y, Kwon M, Sherman MA, D'Gama AM, Doan RN, Rento LM, Girskis KM, Bohrson CL, Kim SN, Nadig A, Luquette LJ, Gulhan DC; Brain Somatic Mosaicism Network; Park PJ, Walsh CA. Rodin RE, et al. Nat Neurosci. 2023 Oct;26(10):1833. doi: 10.1038/s41593-023-01437-x. Nat Neurosci. 2023. PMID: 37644260 No abstract available.
A ventilated perfused lung model platform to dissect the response of the lungs to viral infection.
Derman ID, Alioglu MA, Moses JC, Chroneos ZC, Yilmaz YO, Banerjee D, Koff J, Rizvi SHA, Klunk DN, Celik N, Pochareddy S, Umstead TM, Namli I, Holton SE, Mikacenic C, Thompson JL, Castaneda DC, Hickey DR, Nagamine M, Warang P, Schotsaert M, Chen P, Peeples ME, Palucka K, Ozbolat IT. Derman ID, et al. Among authors: pochareddy s. Trends Biotechnol. 2025 Jul;43(7):1714-1742. doi: 10.1016/j.tibtech.2025.03.012. Epub 2025 Apr 24. Trends Biotechnol. 2025. PMID: 40280814
48 results