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Crystal structure of cathepsin B inhibited with CA030 at 2.0-A resolution: A basis for the design of specific epoxysuccinyl inhibitors.
Turk D, Podobnik M, Popovic T, Katunuma N, Bode W, Huber R, Turk V. Turk D, et al. Biochemistry. 1995 Apr 11;34(14):4791-7. doi: 10.1021/bi00014a037. Biochemistry. 1995. PMID: 7718586
Crystals of cysteine protease human cathepsin B inhibited with CA030 (ethyl ester of epoxysuccinyl-Ile-Pro-OH) [Murata, M., et al. (1991) FEBS Lett. 280, 307-310; Towatari, T., et al. (1991) FEBS Lett. 280, 311-315] were isomorphous to a previous published structure of cat …
Crystals of cysteine protease human cathepsin B inhibited with CA030 (ethyl ester of epoxysuccinyl-Ile-Pro-OH) [Murata, M., et al. (1 …
Crystal structure of porcine cathepsin H determined at 2.1 A resolution: location of the mini-chain C-terminal carboxyl group defines cathepsin H aminopeptidase function.
Guncar G, Podobnik M, Pungercar J, Strukelj B, Turk V, Turk D. Guncar G, et al. Structure. 1998 Jan 15;6(1):51-61. doi: 10.1016/s0969-2126(98)00007-0. Structure. 1998. PMID: 9493267
Structure of human dipeptidyl peptidase I (cathepsin C): exclusion domain added to an endopeptidase framework creates the machine for activation of granular serine proteases.
Turk D, Janjić V, Stern I, Podobnik M, Lamba D, Dahl SW, Lauritzen C, Pedersen J, Turk V, Turk B. Turk D, et al. EMBO J. 2001 Dec 3;20(23):6570-82. doi: 10.1093/emboj/20.23.6570. EMBO J. 2001. PMID: 11726493 Free PMC article.
Crystal structure of Stefin A in complex with cathepsin H: N-terminal residues of inhibitors can adapt to the active sites of endo- and exopeptidases.
Jenko S, Dolenc I, Guncar G, Dobersek A, Podobnik M, Turk D. Jenko S, et al. J Mol Biol. 2003 Feb 21;326(3):875-85. doi: 10.1016/s0022-2836(02)01432-8. J Mol Biol. 2003. PMID: 12581647
Structural and biochemical analysis of the Rv0805 cyclic nucleotide phosphodiesterase from Mycobacterium tuberculosis.
Shenoy AR, Capuder M, Draskovic P, Lamba D, Visweswariah SS, Podobnik M. Shenoy AR, et al. J Mol Biol. 2007 Jan 5;365(1):211-25. doi: 10.1016/j.jmb.2006.10.005. Epub 2006 Oct 6. J Mol Biol. 2007. PMID: 17059828
Inositol hexakisphosphate kinase products contain diphosphate and triphosphate groups.
Draskovic P, Saiardi A, Bhandari R, Burton A, Ilc G, Kovacevic M, Snyder SH, Podobnik M. Draskovic P, et al. Chem Biol. 2008 Mar;15(3):274-86. doi: 10.1016/j.chembiol.2008.01.011. Chem Biol. 2008. PMID: 18355727
A mycobacterial cyclic AMP phosphodiesterase that moonlights as a modifier of cell wall permeability.
Podobnik M, Tyagi R, Matange N, Dermol U, Gupta AK, Mattoo R, Seshadri K, Visweswariah SS. Podobnik M, et al. J Biol Chem. 2009 Nov 20;284(47):32846-57. doi: 10.1074/jbc.M109.049635. Epub 2009 Sep 29. J Biol Chem. 2009. PMID: 19801656 Free PMC article.
Although the genome of M. tuberculosis is endowed with a number of mammalian-like adenylyl cyclases, only a single cAMP phosphodiesterase has been identified that can decrease levels of cAMP produced by the bacterium. We present the crystal structure of the full-length and …
Although the genome of M. tuberculosis is endowed with a number of mammalian-like adenylyl cyclases, only a single cAMP phosphodieste …
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