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COPS: detecting co-occurrence and spatial arrangement of transcription factor binding motifs in genome-wide datasets.
Ha N, Polychronidou M, Lohmann I. Ha N, et al. Among authors: polychronidou m. PLoS One. 2012;7(12):e52055. doi: 10.1371/journal.pone.0052055. Epub 2012 Dec 18. PLoS One. 2012. PMID: 23272209 Free PMC article.
Hox transcriptomics in Drosophila embryos.
Polychronidou M, Lohmann I. Polychronidou M, et al. Methods Mol Biol. 2014;1196:197-208. doi: 10.1007/978-1-4939-1242-1_12. Methods Mol Biol. 2014. PMID: 25151165
The cis-regulatory code of Hox function in Drosophila.
Sorge S, Ha N, Polychronidou M, Friedrich J, Bezdan D, Kaspar P, Schaefer MH, Ossowski S, Henz SR, Mundorf J, Rätzer J, Papagiannouli F, Lohmann I. Sorge S, et al. Among authors: polychronidou m. EMBO J. 2012 Aug 1;31(15):3323-33. doi: 10.1038/emboj.2012.179. Epub 2012 Jul 10. EMBO J. 2012. PMID: 22781127 Free PMC article.
Cell-type specific cis-regulatory networks: insights from Hox transcription factors.
Polychronidou M, Lohmann I. Polychronidou M, et al. Fly (Austin). 2013 Jan-Mar;7(1):13-7. doi: 10.4161/fly.22939. Epub 2012 Dec 6. Fly (Austin). 2013. PMID: 23221502 Free PMC article.
Methods to drive systems biology forward.
Polychronidou M, Lemberger T. Polychronidou M, et al. Mol Syst Biol. 2017 Dec 21;13(12):996. doi: 10.15252/msb.20178155. Mol Syst Biol. 2017. PMID: 29269384 Free PMC article.
The Hox transcription factor Ubx stabilizes lineage commitment by suppressing cellular plasticity in Drosophila.
Domsch K, Carnesecchi J, Disela V, Friedrich J, Trost N, Ermakova O, Polychronidou M, Lohmann I. Domsch K, et al. Among authors: polychronidou m. Elife. 2019 May 3;8:e42675. doi: 10.7554/eLife.42675. Elife. 2019. PMID: 31050646 Free PMC article.
The cis-regulatory code of Hox function in Drosophila.
Sorge S, Ha N, Polychronidou M, Friedrich J, Bezdan D, Kaspar P, Schaefer MH, Ossowski S, Henz SR, Mundorf J, Rätzer J, Papagiannouli F, Lohmann I. Sorge S, et al. Among authors: polychronidou m. EMBO J. 2015 Nov 12;34(22):2862. doi: 10.15252/embj.201593321. EMBO J. 2015. PMID: 26564906 Free PMC article.
Structured Methods for reproducible science.
Polychronidou M. Polychronidou M. Mol Syst Biol. 2018 Jul 24;14(7):e8556. doi: 10.15252/msb.20188556. Mol Syst Biol. 2018. PMID: 30045936 Free PMC article.
Farnesylated nuclear proteins Kugelkern and lamin Dm0 affect nuclear morphology by directly interacting with the nuclear membrane.
Polychronidou M, Hellwig A, Grosshans J. Polychronidou M, et al. Mol Biol Cell. 2010 Oct 1;21(19):3409-20. doi: 10.1091/mbc.E10-03-0230. Epub 2010 Aug 4. Mol Biol Cell. 2010. PMID: 20685963 Free PMC article.
Determining nuclear shape: the role of farnesylated nuclear membrane proteins.
Polychronidou M, Grobhans J. Polychronidou M, et al. Nucleus. 2011 Jan-Feb;2(1):17-23. doi: 10.4161/nucl.2.1.13992. Nucleus. 2011. PMID: 21647295 Free PMC article.
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