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Crystal structure of a DNA catalyst.
Ponce-Salvatierra A, Wawrzyniak-Turek K, Steuerwald U, Höbartner C, Pena V. Ponce-Salvatierra A, et al. Nature. 2016 Jan 14;529(7585):231-4. doi: 10.1038/nature16471. Epub 2016 Jan 6. Nature. 2016. PMID: 26735012
DNAmoreDB, a database of DNAzymes.
Ponce-Salvatierra A, Boccaletto P, Bujnicki JM. Ponce-Salvatierra A, et al. Nucleic Acids Res. 2021 Jan 8;49(D1):D76-D81. doi: 10.1093/nar/gkaa867. Nucleic Acids Res. 2021. PMID: 33053178 Free PMC article.
Computational modeling of RNA 3D structure based on experimental data.
Ponce-Salvatierra A, Astha, Merdas K, Nithin C, Ghosh P, Mukherjee S, Bujnicki JM. Ponce-Salvatierra A, et al. Biosci Rep. 2019 Feb 8;39(2):BSR20180430. doi: 10.1042/BSR20180430. Print 2019 Feb 28. Biosci Rep. 2019. PMID: 30670629 Free PMC article. Review.
Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models.
Gumna J, Antczak M, Adamiak RW, Bujnicki JM, Chen SJ, Ding F, Ghosh P, Li J, Mukherjee S, Nithin C, Pachulska-Wieczorek K, Ponce-Salvatierra A, Popenda M, Sarzynska J, Wirecki T, Zhang D, Zhang S, Zok T, Westhof E, Miao Z, Szachniuk M, Rybarczyk A. Gumna J, et al. Among authors: ponce salvatierra a. Int J Mol Sci. 2022 Aug 25;23(17):9630. doi: 10.3390/ijms23179630. Int J Mol Sci. 2022. PMID: 36077037 Free PMC article.