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Hierarchical scaffolding with Bambus.
Pop M, Kosack DS, Salzberg SL. Pop M, et al. Genome Res. 2004 Jan;14(1):149-59. doi: 10.1101/gr.1536204. Genome Res. 2004. PMID: 14707177 Free PMC article.
Minimus: a fast, lightweight genome assembler.
Sommer DD, Delcher AL, Salzberg SL, Pop M. Sommer DD, et al. Among authors: pop m. BMC Bioinformatics. 2007 Feb 26;8:64. doi: 10.1186/1471-2105-8-64. BMC Bioinformatics. 2007. PMID: 17324286 Free PMC article.
Figaro: a novel statistical method for vector sequence removal.
White JR, Roberts M, Yorke JA, Pop M. White JR, et al. Among authors: pop m. Bioinformatics. 2008 Feb 15;24(4):462-7. doi: 10.1093/bioinformatics/btm632. Epub 2008 Jan 17. Bioinformatics. 2008. PMID: 18202027 Free PMC article.
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