Pop M - Search Results

1

Parametric complexity of sequence assembly: theory and applications to next generation sequencing.

Nagarajan N, Pop M. Nagarajan N, et al. Among authors: pop m. J Comput Biol. 2009 Jul;16(7):897-908. doi: 10.1089/cmb.2009.0005. J Comput Biol. 2009. PMID: 19580519

2

Hierarchical scaffolding with Bambus.

Pop M, Kosack DS, Salzberg SL. Pop M, et al. Genome Res. 2004 Jan;14(1):149-59. doi: 10.1101/gr.1536204. Genome Res. 2004. PMID: 14707177 Free PMC article.

3

Minimus: a fast, lightweight genome assembler.

Sommer DD, Delcher AL, Salzberg SL, Pop M. Sommer DD, et al. Among authors: pop m. BMC Bioinformatics. 2007 Feb 26;8:64. doi: 10.1186/1471-2105-8-64. BMC Bioinformatics. 2007. PMID: 17324286 Free PMC article.

4

Figaro: a novel statistical method for vector sequence removal.

White JR, Roberts M, Yorke JA, Pop M. White JR, et al. Among authors: pop m. Bioinformatics. 2008 Feb 15;24(4):462-7. doi: 10.1093/bioinformatics/btm632. Epub 2008 Jan 17. Bioinformatics. 2008. PMID: 18202027 Free PMC article.

5

Bioinformatics challenges of new sequencing technology.

Pop M, Salzberg SL. Pop M, et al. Trends Genet. 2008 Mar;24(3):142-9. doi: 10.1016/j.tig.2007.12.006. Epub 2008 Feb 11. Trends Genet. 2008. PMID: 18262676 Free PMC article. Review.

6

Genome assembly forensics: finding the elusive mis-assembly.

Phillippy AM, Schatz MC, Pop M. Phillippy AM, et al. Among authors: pop m. Genome Biol. 2008;9(3):R55. doi: 10.1186/gb-2008-9-3-r55. Epub 2008 Mar 14. Genome Biol. 2008. PMID: 18341692 Free PMC article.

7

Scaffolding and validation of bacterial genome assemblies using optical restriction maps.

Nagarajan N, Read TD, Pop M. Nagarajan N, et al. Among authors: pop m. Bioinformatics. 2008 May 15;24(10):1229-35. doi: 10.1093/bioinformatics/btn102. Epub 2008 Mar 20. Bioinformatics. 2008. PMID: 18356192 Free PMC article.

8

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

Langmead B, Trapnell C, Pop M, Salzberg SL. Langmead B, et al. Among authors: pop m. Genome Biol. 2009;10(3):R25. doi: 10.1186/gb-2009-10-3-r25. Epub 2009 Mar 4. Genome Biol. 2009. PMID: 19261174 Free PMC article.

9

Statistical methods for detecting differentially abundant features in clinical metagenomic samples.

White JR, Nagarajan N, Pop M. White JR, et al. Among authors: pop m. PLoS Comput Biol. 2009 Apr;5(4):e1000352. doi: 10.1371/journal.pcbi.1000352. Epub 2009 Apr 10. PLoS Comput Biol. 2009. PMID: 19360128 Free PMC article.

10

Genome assembly reborn: recent computational challenges.

Pop M. Pop M. Brief Bioinform. 2009 Jul;10(4):354-66. doi: 10.1093/bib/bbp026. Epub 2009 May 29. Brief Bioinform. 2009. PMID: 19482960 Free PMC article.

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