Porto M - Search Results

1

Statistical properties of neutral evolution.

Bastolla U, Porto M, Roman HE, Vendruscolo M. Bastolla U, et al. Among authors: porto m. J Mol Evol. 2003;57 Suppl 1:S103-19. doi: 10.1007/s00239-003-0013-4. J Mol Evol. 2003. PMID: 15008407

2

Mutation bias favors protein folding stability in the evolution of small populations.

Mendez R, Fritsche M, Porto M, Bastolla U. Mendez R, et al. Among authors: porto m. PLoS Comput Biol. 2010 May 6;6(5):e1000767. doi: 10.1371/journal.pcbi.1000767. PLoS Comput Biol. 2010. PMID: 20463869 Free PMC article.

3

A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank.

Bastolla U, Porto M, Roman HE, Vendruscolo M. Bastolla U, et al. Among authors: porto m. BMC Evol Biol. 2006 May 31;6:43. doi: 10.1186/1471-2148-6-43. BMC Evol Biol. 2006. PMID: 16737532 Free PMC article.

4

Looking at structure, stability, and evolution of proteins through the principal eigenvector of contact matrices and hydrophobicity profiles.

Bastolla U, Porto M, Roman HE, Vendruscolo M. Bastolla U, et al. Among authors: porto m. Gene. 2005 Mar 14;347(2):219-30. doi: 10.1016/j.gene.2004.12.015. Gene. 2005. PMID: 15777696

5

Prediction of site-specific amino acid distributions and limits of divergent evolutionary changes in protein sequences.

Porto M, Roman HE, Vendruscolo M, Bastolla U. Porto M, et al. Mol Biol Evol. 2005 Mar;22(3):630-8. doi: 10.1093/molbev/msi048. Epub 2004 Nov 10. Mol Biol Evol. 2005. PMID: 15537801

6

Principal eigenvector of contact matrices and hydrophobicity profiles in proteins.

Bastolla U, Porto M, Roman HE, Vendruscolo M. Bastolla U, et al. Among authors: porto m. Proteins. 2005 Jan 1;58(1):22-30. doi: 10.1002/prot.20240. Proteins. 2005. PMID: 15523667

7

Lack of self-averaging in neutral evolution of proteins.

Bastolla U, Porto M, Roman HE, Vendruscolo M. Bastolla U, et al. Among authors: porto m. Phys Rev Lett. 2002 Nov 11;89(20):208101. doi: 10.1103/PhysRevLett.89.208101. Epub 2002 Oct 24. Phys Rev Lett. 2002. PMID: 12443510

8

Connectivity of neutral networks, overdispersion, and structural conservation in protein evolution.

Bastolla U, Porto M, Eduardo Roman MH, Vendruscolo MH. Bastolla U, et al. Among authors: porto m. J Mol Evol. 2003 Mar;56(3):243-54. doi: 10.1007/s00239-002-2350-0. J Mol Evol. 2003. PMID: 12612828

9

Effective connectivity profile: a structural representation that evidences the relationship between protein structures and sequences.

Bastolla U, Ortíz AR, Porto M, Teichert F. Bastolla U, et al. Among authors: porto m. Proteins. 2008 Dec;73(4):872-88. doi: 10.1002/prot.22113. Proteins. 2008. PMID: 18536008

10

Local interactions in protein folding determined through an inverse folding model.

Bastolla U, Porto M, Ortíz AR. Bastolla U, et al. Among authors: porto m. Proteins. 2008 Apr;71(1):278-99. doi: 10.1002/prot.21730. Proteins. 2008. PMID: 17932940

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