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On-line resources for bacterial micro-evolution studies using MLVA or CRISPR typing.
Grissa I, Bouchon P, Pourcel C, Vergnaud G. Grissa I, et al. Among authors: pourcel c. Biochimie. 2008 Apr;90(4):660-8. doi: 10.1016/j.biochi.2007.07.014. Epub 2007 Jul 28. Biochimie. 2008. PMID: 17822824 Review.
Characterization of a tandem repeat polymorphism in Legionella pneumophila and its use for genotyping.
Pourcel C, Vidgop Y, Ramisse F, Vergnaud G, Tram C. Pourcel C, et al. J Clin Microbiol. 2003 May;41(5):1819-26. doi: 10.1128/jcm.41.5.1819-1826.2003. J Clin Microbiol. 2003. PMID: 12734211 Free PMC article.
Tandem repeats analysis for the high resolution phylogenetic analysis of Yersinia pestis.
Pourcel C, André-Mazeaud F, Neubauer H, Ramisse F, Vergnaud G. Pourcel C, et al. BMC Microbiol. 2004 Jun 8;4:22. doi: 10.1186/1471-2180-4-22. BMC Microbiol. 2004. PMID: 15186506 Free PMC article.
Identification of variable-number tandem-repeat loci in Leptospira interrogans sensu stricto.
Majed Z, Bellenger E, Postic D, Pourcel C, Baranton G, Picardeau M. Majed Z, et al. Among authors: pourcel c. J Clin Microbiol. 2005 Feb;43(2):539-45. doi: 10.1128/JCM.43.2.539-545.2005. J Clin Microbiol. 2005. PMID: 15695642 Free PMC article.
CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies.
Pourcel C, Salvignol G, Vergnaud G. Pourcel C, et al. Microbiology (Reading). 2005 Mar;151(Pt 3):653-663. doi: 10.1099/mic.0.27437-0. Microbiology (Reading). 2005. PMID: 15758212
Comparison of minisatellite polymorphisms in the Bacillus cereus complex: a simple assay for large-scale screening and identification of strains most closely related to Bacillus anthracis.
Valjevac S, Hilaire V, Lisanti O, Ramisse F, Hernandez E, Cavallo JD, Pourcel C, Vergnaud G. Valjevac S, et al. Among authors: pourcel c. Appl Environ Microbiol. 2005 Nov;71(11):6613-23. doi: 10.1128/AEM.71.11.6613-6623.2005. Appl Environ Microbiol. 2005. PMID: 16269689 Free PMC article.
Evaluation and selection of tandem repeat loci for Streptococcus pneumoniae MLVA strain typing.
Koeck JL, Njanpop-Lafourcade BM, Cade S, Varon E, Sangare L, Valjevac S, Vergnaud G, Pourcel C. Koeck JL, et al. Among authors: pourcel c. BMC Microbiol. 2005 Nov 16;5:66. doi: 10.1186/1471-2180-5-66. BMC Microbiol. 2005. PMID: 16287512 Free PMC article.
Identification of variable-number tandem-repeat (VNTR) sequences in Legionella pneumophila and development of an optimized multiple-locus VNTR analysis typing scheme.
Pourcel C, Visca P, Afshar B, D'Arezzo S, Vergnaud G, Fry NK. Pourcel C, et al. J Clin Microbiol. 2007 Apr;45(4):1190-9. doi: 10.1128/JCM.02078-06. Epub 2007 Jan 24. J Clin Microbiol. 2007. PMID: 17251393 Free PMC article.
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats.
Grissa I, Vergnaud G, Pourcel C. Grissa I, et al. Among authors: pourcel c. BMC Bioinformatics. 2007 May 23;8:172. doi: 10.1186/1471-2105-8-172. BMC Bioinformatics. 2007. PMID: 17521438 Free PMC article.
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.
Grissa I, Vergnaud G, Pourcel C. Grissa I, et al. Among authors: pourcel c. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W52-7. doi: 10.1093/nar/gkm360. Epub 2007 May 30. Nucleic Acids Res. 2007. PMID: 17537822 Free PMC article.
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