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Globally optimal stitching of tiled 3D microscopic image acquisitions.
Preibisch S, Saalfeld S, Tomancak P. Preibisch S, et al. Bioinformatics. 2009 Jun 1;25(11):1463-5. doi: 10.1093/bioinformatics/btp184. Epub 2009 Apr 3. Bioinformatics. 2009. PMID: 19346324 Free PMC article.
BigDataViewer: visualization and processing for large image data sets.
Pietzsch T, Saalfeld S, Preibisch S, Tomancak P. Pietzsch T, et al. Among authors: preibisch s. Nat Methods. 2015 Jun;12(6):481-3. doi: 10.1038/nmeth.3392. Nat Methods. 2015. PMID: 26020499 No abstract available.
Using Light Sheet Fluorescence Microscopy to Image Zebrafish Eye Development.
Icha J, Schmied C, Sidhaye J, Tomancak P, Preibisch S, Norden C. Icha J, et al. Among authors: preibisch s. J Vis Exp. 2016 Apr 10;(110):e53966. doi: 10.3791/53966. J Vis Exp. 2016. PMID: 27167079 Free PMC article.
ImgLib2--generic image processing in Java.
Pietzsch T, Preibisch S, Tomancák P, Saalfeld S. Pietzsch T, et al. Bioinformatics. 2012 Nov 15;28(22):3009-11. doi: 10.1093/bioinformatics/bts543. Epub 2012 Sep 8. Bioinformatics. 2012. PMID: 22962343 Free PMC article.
Fiji: an open-source platform for biological-image analysis.
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A. Schindelin J, et al. Nat Methods. 2012 Jun 28;9(7):676-82. doi: 10.1038/nmeth.2019. Nat Methods. 2012. PMID: 22743772 Free PMC article.
An automated workflow for parallel processing of large multiview SPIM recordings.
Schmied C, Steinbach P, Pietzsch T, Preibisch S, Tomancak P. Schmied C, et al. Among authors: preibisch s. Bioinformatics. 2016 Apr 1;32(7):1112-4. doi: 10.1093/bioinformatics/btv706. Epub 2015 Dec 1. Bioinformatics. 2016. PMID: 26628585 Free PMC article.
Nuclear accessibility of ╬▓-actin mRNA is measured by 3D single-molecule real-time tracking.
Smith CS, Preibisch S, Joseph A, Abrahamsson S, Rieger B, Myers E, Singer RH, Grunwald D. Smith CS, et al. J Cell Biol. 2015 May 25;209(4):609-19. doi: 10.1083/jcb.201411032. J Cell Biol. 2015. PMID: 26008747 Free PMC article.
Bioimage Informatics in the context of Drosophila research.
Jug F, Pietzsch T, Preibisch S, Tomancak P. Jug F, et al. Methods. 2014 Jun 15;68(1):60-73. doi: 10.1016/j.ymeth.2014.04.004. Epub 2014 Apr 13. Methods. 2014. PMID: 24732429 Review.
Efficient Bayesian-based multiview deconvolution.
Preibisch S, Amat F, Stamataki E, Sarov M, Singer RH, Myers E, Tomancak P. Preibisch S, et al. Nat Methods. 2014 Jun;11(6):645-8. doi: 10.1038/nmeth.2929. Epub 2014 Apr 20. Nat Methods. 2014. PMID: 24747812 Free PMC article.
Gene expression divergence recapitulates the developmental hourglass model.
Kalinka AT, Varga KM, Gerrard DT, Preibisch S, Corcoran DL, Jarrells J, Ohler U, Bergman CM, Tomancak P. Kalinka AT, et al. Nature. 2010 Dec 9;468(7325):811-4. doi: 10.1038/nature09634. Nature. 2010. PMID: 21150996
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