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Fiji: an open-source platform for biological-image analysis.
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A. Schindelin J, et al. Nat Methods. 2012 Jun 28;9(7):676-82. doi: 10.1038/nmeth.2019. Nat Methods. 2012. PMID: 22743772 Free PMC article.
Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function.
Vladimirov N, Wang C, Höckendorf B, Pujala A, Tanimoto M, Mu Y, Yang CT, Wittenbach JD, Freeman J, Preibisch S, Koyama M, Keller PJ, Ahrens MB. Vladimirov N, et al. Among authors: preibisch s. Nat Methods. 2018 Dec;15(12):1117-1125. doi: 10.1038/s41592-018-0221-x. Epub 2018 Nov 30. Nat Methods. 2018. PMID: 30504888
BigDataViewer: visualization and processing for large image data sets.
Pietzsch T, Saalfeld S, Preibisch S, Tomancak P. Pietzsch T, et al. Among authors: preibisch s. Nat Methods. 2015 Jun;12(6):481-3. doi: 10.1038/nmeth.3392. Nat Methods. 2015. PMID: 26020499 No abstract available.
OpenSPIM: an open-access light-sheet microscopy platform.
Pitrone PG, Schindelin J, Stuyvenberg L, Preibisch S, Weber M, Eliceiri KW, Huisken J, Tomancak P. Pitrone PG, et al. Nat Methods. 2013 Jul;10(7):598-9. doi: 10.1038/nmeth.2507. Epub 2013 Jun 9. Nat Methods. 2013. PMID: 23749304 Free PMC article. No abstract available.
Software for bead-based registration of selective plane illumination microscopy data.
Preibisch S, Saalfeld S, Schindelin J, Tomancak P. Preibisch S, et al. Nat Methods. 2010 Jun;7(6):418-9. doi: 10.1038/nmeth0610-418. Nat Methods. 2010. PMID: 20508634 No abstract available.
Gene expression divergence recapitulates the developmental hourglass model.
Kalinka AT, Varga KM, Gerrard DT, Preibisch S, Corcoran DL, Jarrells J, Ohler U, Bergman CM, Tomancak P. Kalinka AT, et al. Nature. 2010 Dec 9;468(7325):811-4. doi: 10.1038/nature09634. Nature. 2010. PMID: 21150996
Using Light Sheet Fluorescence Microscopy to Image Zebrafish Eye Development.
Icha J, Schmied C, Sidhaye J, Tomancak P, Preibisch S, Norden C. Icha J, et al. Among authors: preibisch s. J Vis Exp. 2016 Apr 10;(110):e53966. doi: 10.3791/53966. J Vis Exp. 2016. PMID: 27167079 Free PMC article.
ImgLib2--generic image processing in Java.
Pietzsch T, Preibisch S, Tomancák P, Saalfeld S. Pietzsch T, et al. Bioinformatics. 2012 Nov 15;28(22):3009-11. doi: 10.1093/bioinformatics/bts543. Epub 2012 Sep 8. Bioinformatics. 2012. PMID: 22962343 Free PMC article.
Globally optimal stitching of tiled 3D microscopic image acquisitions.
Preibisch S, Saalfeld S, Tomancak P. Preibisch S, et al. Bioinformatics. 2009 Jun 1;25(11):1463-5. doi: 10.1093/bioinformatics/btp184. Epub 2009 Apr 3. Bioinformatics. 2009. PMID: 19346324 Free PMC article.
Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb.
Wolff C, Tinevez JY, Pietzsch T, Stamataki E, Harich B, Guignard L, Preibisch S, Shorte S, Keller PJ, Tomancak P, Pavlopoulos A. Wolff C, et al. Among authors: preibisch s. Elife. 2018 Mar 29;7:e34410. doi: 10.7554/eLife.34410. Elife. 2018. PMID: 29595475 Free PMC article.
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