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NRPSsp: non-ribosomal peptide synthase substrate predictor.
Prieto C, García-Estrada C, Lorenzana D, Martín JF. Prieto C, et al. Bioinformatics. 2012 Feb 1;28(3):426-7. doi: 10.1093/bioinformatics/btr659. Epub 2011 Nov 29. Bioinformatics. 2012. PMID: 22130593
Characterization of Nonribosomal Peptide Synthetases with NRPSsp.
Prieto C. Prieto C. Methods Mol Biol. 2016;1401:273-8. doi: 10.1007/978-1-4939-3375-4_17. Methods Mol Biol. 2016. PMID: 26831714
APID2NET: unified interactome graphic analyzer.
Hernandez-Toro J, Prieto C, De las Rivas J. Hernandez-Toro J, et al. Among authors: prieto c. Bioinformatics. 2007 Sep 15;23(18):2495-7. doi: 10.1093/bioinformatics/btm373. Epub 2007 Jul 21. Bioinformatics. 2007. PMID: 17644818
D3GB: An Interactive Genome Browser for R, Python, and WordPress.
Barrios D, Prieto C. Barrios D, et al. Among authors: prieto c. J Comput Biol. 2017 May;24(5):447-449. doi: 10.1089/cmb.2016.0213. Epub 2017 Feb 16. J Comput Biol. 2017. PMID: 28437135
APID interactomes: providing proteome-based interactomes with controlled quality for multiple species and derived networks.
Alonso-López D, Gutiérrez MA, Lopes KP, Prieto C, Santamaría R, De Las Rivas J. Alonso-López D, et al. Among authors: prieto c. Nucleic Acids Res. 2016 Jul 8;44(W1):W529-35. doi: 10.1093/nar/gkw363. Epub 2016 Apr 30. Nucleic Acids Res. 2016. PMID: 27131791 Free PMC article.
Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles.
Prieto C, Risueño A, Fontanillo C, De las Rivas J. Prieto C, et al. PLoS One. 2008;3(12):e3911. doi: 10.1371/journal.pone.0003911. Epub 2008 Dec 15. PLoS One. 2008. PMID: 19081792 Free PMC article.
APID: Agile Protein Interaction DataAnalyzer.
Prieto C, De Las Rivas J. Prieto C, et al. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W298-302. doi: 10.1093/nar/gkl128. Nucleic Acids Res. 2006. PMID: 16845013 Free PMC article.
RJSplot: Interactive Graphs with R.
Barrios D, Prieto C. Barrios D, et al. Among authors: prieto c. Mol Inform. 2018 Mar;37(3). doi: 10.1002/minf.201700090. Epub 2017 Oct 5. Mol Inform. 2018. PMID: 28980447
Protein interactions: mapping interactome networks to support drug target discovery and selection.
De Las Rivas J, Prieto C. De Las Rivas J, et al. Among authors: prieto c. Methods Mol Biol. 2012;910:279-96. doi: 10.1007/978-1-61779-965-5_12. Methods Mol Biol. 2012. PMID: 22821600 Review.
The biological age linked to oxidative stress modifies breast cancer aggressiveness.
Sáez-Freire MDM, Blanco-Gómez A, Castillo-Lluva S, Gómez-Vecino A, Galvis-Jiménez JM, Martín-Seisdedos C, Isidoro-García M, Hontecillas-Prieto L, García-Cenador MB, García-Criado FJ, Patino-Alonso MC, Galindo-Villardón P, Mao JH, Prieto C, Castellanos-Martín A, Kaderali L, Pérez-Losada J. Sáez-Freire MDM, et al. Among authors: prieto c. Free Radic Biol Med. 2018 May 20;120:133-146. doi: 10.1016/j.freeradbiomed.2018.03.012. Epub 2018 Mar 14. Free Radic Biol Med. 2018. PMID: 29550329
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