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Multiple sequence alignment with user-defined anchor points.
Morgenstern B, Prohaska SJ, Pöhler D, Stadler PF. Morgenstern B, et al. Among authors: prohaska sj. Algorithms Mol Biol. 2006 Apr 19;1(1):6. doi: 10.1186/1748-7188-1-6. Algorithms Mol Biol. 2006. PMID: 16722533 Free PMC article.
Multiple sequence alignment with user-defined constraints at GOBICS.
Morgenstern B, Werner N, Prohaska SJ, Steinkamp R, Schneider I, Subramanian AR, Stadler PF, Weyer-Menkhoff J. Morgenstern B, et al. Among authors: prohaska sj. Bioinformatics. 2005 Apr 1;21(7):1271-3. doi: 10.1093/bioinformatics/bti142. Epub 2004 Nov 16. Bioinformatics. 2005. PMID: 15546937
The footprint sorting problem.
Fried C, Hordijk W, Prohaska SJ, Stadler CR, Stadler PF. Fried C, et al. Among authors: prohaska sj. J Chem Inf Comput Sci. 2004 Mar-Apr;44(2):332-8. doi: 10.1021/ci030411+. J Chem Inf Comput Sci. 2004. PMID: 15032508
Evolution of vault RNAs.
Stadler PF, Chen JJ, Hackermüller J, Hoffmann S, Horn F, Khaitovich P, Kretzschmar AK, Mosig A, Prohaska SJ, Qi X, Schutt K, Ullmann K. Stadler PF, et al. Among authors: prohaska sj. Mol Biol Evol. 2009 Sep;26(9):1975-91. doi: 10.1093/molbev/msp112. Epub 2009 Jun 2. Mol Biol Evol. 2009. PMID: 19491402
Genomic organization of eukaryotic tRNAs.
Bermudez-Santana C, Attolini CS, Kirsten T, Engelhardt J, Prohaska SJ, Steigele S, Stadler PF. Bermudez-Santana C, et al. Among authors: prohaska sj. BMC Genomics. 2010 Apr 28;11:270. doi: 10.1186/1471-2164-11-270. BMC Genomics. 2010. PMID: 20426822 Free PMC article.
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