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2003 1
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19 results

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Page 1
Control of plastidial metabolism by the Clp protease complex.
Rodriguez-Concepcion M, D'Andrea L, Pulido P. Rodriguez-Concepcion M, et al. Among authors: d andrea l. J Exp Bot. 2019 Apr 12;70(7):2049-2058. doi: 10.1093/jxb/ery441. J Exp Bot. 2019. PMID: 30576524 Free article. Review.
Virtually all enzymes involved in plastid-localized metabolic pathways are encoded by the nuclear genome and imported into plastids. Once there, protein quality control systems ensure proper folding of the mature forms and remove irreversibly damaged proteins. ...Th …
Virtually all enzymes involved in plastid-localized metabolic pathways are encoded by the nuclear genome and imported into plastids. Once th …
TPR proteins: the versatile helix.
D'Andrea LD, Regan L. D'Andrea LD, et al. Trends Biochem Sci. 2003 Dec;28(12):655-62. doi: 10.1016/j.tibs.2003.10.007. Trends Biochem Sci. 2003. PMID: 14659697 Review.
Tetratrico peptide repeat (TPR) proteins have several interesting properties, including their folding characteristics, modular architecture and range of binding specificities. In the past five years, many 3D structures of TPR domains have been solved, revealing at a molecu …
Tetratrico peptide repeat (TPR) proteins have several interesting properties, including their folding characteristics, modular archit …
Structural characterization of the thermal unfolding pathway of human VEGFR1 D2 domain.
Diana D, Di Stasi R, García-Viñuales S, De Rosa L, Isernia C, Malgieri G, Milardi D, D'Andrea LD, Fattorusso R. Diana D, et al. Among authors: d andrea ld, de rosa l, di stasi r. FEBS J. 2022 Mar;289(6):1591-1602. doi: 10.1111/febs.16246. Epub 2021 Nov 18. FEBS J. 2022. PMID: 34689403 Free PMC article.
Folding stability is a crucial feature of protein evolution and is essential for protein functions. Thus, the comprehension of protein folding mechanisms represents an important complement to protein structure and function, crucial to det …
Folding stability is a crucial feature of protein evolution and is essential for protein functions. Thus, the comprehen …
Probing the helical stability in a VEGF-mimetic peptide.
De Rosa L, Diana D, Di Stasi R, Romanelli A, Sciacca MFM, Milardi D, Isernia C, Fattorusso R, D'Andrea LD. De Rosa L, et al. Among authors: d andrea ld, di stasi r. Bioorg Chem. 2021 Nov;116:105379. doi: 10.1016/j.bioorg.2021.105379. Epub 2021 Sep 21. Bioorg Chem. 2021. PMID: 34563997 Free article.
The analysis of the forces governing helix formation and stability in peptides and proteins has attracted considerable interest in order to shed light on folding mechanism. We analyzed the role of hydrophobic interaction, steric hindrance and chain length on i, i + 3 posit …
The analysis of the forces governing helix formation and stability in peptides and proteins has attracted considerable interest in order to …
Biochemical and Conformational Characterization of Recombinant VEGFR2 Domain 7.
Di Stasi R, Diana D, De Rosa L, Fattorusso R, D'Andrea LD. Di Stasi R, et al. Among authors: d andrea ld, de rosa l. Mol Biotechnol. 2019 Nov;61(11):860-872. doi: 10.1007/s12033-019-00211-4. Mol Biotechnol. 2019. PMID: 31531759
Here, we describe a robust and efficient procedure for the preparation in E. coli of the VEGFR2 domain 7. The protein was obtained with a good yield and was properly folded. It was investigated in a biochemical and structural study, providing information on its conformatio …
Here, we describe a robust and efficient procedure for the preparation in E. coli of the VEGFR2 domain 7. The protein was obtained wi …
Hepatitis A Virus Codon Usage: Implications for Translation Kinetics and Capsid Folding.
Pintó RM, Pérez-Rodríguez FJ, D'Andrea L, de Castellarnau M, Guix S, Bosch A. Pintó RM, et al. Among authors: d andrea l. Cold Spring Harb Perspect Med. 2018 Oct 1;8(10):a031781. doi: 10.1101/cshperspect.a031781. Cold Spring Harb Perspect Med. 2018. PMID: 29530949 Free PMC article. Review.
Rare codons in the capsid coding region slow down the translation elongation rate, and in doing so intrinsically modulate capsid folding, which is critical to the stability of a virus transmitted through the fecal-oral route. HAV is a paradigmatic example of what has been …
Rare codons in the capsid coding region slow down the translation elongation rate, and in doing so intrinsically modulate capsid folding …
Interference with Clp protease impairs carotenoid accumulation during tomato fruit ripening.
D'Andrea L, Simon-Moya M, Llorente B, Llamas E, Marro M, Loza-Alvarez P, Li L, Rodriguez-Concepcion M. D'Andrea L, et al. J Exp Bot. 2018 Mar 24;69(7):1557-1568. doi: 10.1093/jxb/erx491. J Exp Bot. 2018. PMID: 29385595 Free PMC article.
We conclude that the Clp protease contributes to the differentiation of chloroplasts into chromoplasts during tomato fruit ripening, acting in co-ordination with specific chaperones that alleviate protein folding stress, promote enzyme stability and accumulation, an …
We conclude that the Clp protease contributes to the differentiation of chloroplasts into chromoplasts during tomato fruit ripening, acting …
Switching the N-Capping Region from all-L to all-D Amino Acids in a VEGF Mimetic Helical Peptide.
De Rosa L, Diana D, Capasso D, Stefania R, Di Stasi R, Fattorusso R, D'Andrea LD. De Rosa L, et al. Among authors: d andrea ld, di stasi r. Molecules. 2022 Oct 17;27(20):6982. doi: 10.3390/molecules27206982. Molecules. 2022. PMID: 36296575 Free PMC article.
In the VEGF mimetic helical peptide QK, the N-capping region was previously demonstrated to be a key factor of QK helical folding. In this paper, we explored the effect of the chiral inversion of the N-capping sequence on QK folding, performing conformational analys …
In the VEGF mimetic helical peptide QK, the N-capping region was previously demonstrated to be a key factor of QK helical folding. In …
Manipulation of Plastidial Protein Quality Control Components as a New Strategy to Improve Carotenoid Contents in Tomato Fruit.
D'Andrea L, Rodriguez-Concepcion M. D'Andrea L, et al. Front Plant Sci. 2019 Sep 5;10:1071. doi: 10.3389/fpls.2019.01071. eCollection 2019. Front Plant Sci. 2019. PMID: 31543891 Free PMC article.
Heynh. has unveiled a critical role of chloroplast protein quality control components in the regulation of carotenoid biosynthesis. The accumulation (i.e. degradation rate) and activity (i.e. folding status) of phytoene synthase (PSY) and other Arabidopsis biosynthe …
Heynh. has unveiled a critical role of chloroplast protein quality control components in the regulation of carotenoid biosynthesis. T …
Probing the Molecular Origin of Native-State Flexibility in Repeat Proteins.
Cohen SS, Riven I, Cortajarena AL, De Rosa L, D'Andrea LD, Regan L, Haran G. Cohen SS, et al. Among authors: d andrea ld, de rosa l. J Am Chem Soc. 2015 Aug 19;137(32):10367-73. doi: 10.1021/jacs.5b06160. Epub 2015 Aug 6. J Am Chem Soc. 2015. PMID: 26207891 Free article.
We probe the molecular origin of the spring-like behavior of repeat proteins using a designed tetratricopeptide repeat protein with three repeat units (CTPR3). Single-molecule fluorescence studies of variants of the protein with FRET pairs at different positions sho …
We probe the molecular origin of the spring-like behavior of repeat proteins using a designed tetratricopeptide repeat protein with t …
19 results