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The copy-number of plasmids and other genetic elements can be determined by SYBR-Green-based quantitative real-time PCR.
Providenti MA, O'Brien JM, Ewing RJ, Paterson ES, Smith ML. Providenti MA, et al. J Microbiol Methods. 2006 Jun;65(3):476-87. doi: 10.1016/j.mimet.2005.09.007. Epub 2005 Oct 10. J Microbiol Methods. 2006. PMID: 16216354
Development of AFLP-derived, functionally specific markers for environmental persistence studies of fungal strains.
Hynes SS, Chaudhry O, Providenti MA, Smith ML. Hynes SS, et al. Among authors: providenti ma. Can J Microbiol. 2006 May;52(5):451-61. doi: 10.1139/w05-140. Can J Microbiol. 2006. PMID: 16699570
Comamonas testosteroni BR6020 possesses a single genetic locus for extradiol cleavage of protocatechuate.
Providenti MA, Mampel J, MacSween S, Cook AM, Wyndham RC. Providenti MA, et al. Microbiology (Reading). 2001 Aug;147(Pt 8):2157-2167. doi: 10.1099/00221287-147-8-2157. Microbiology (Reading). 2001. PMID: 11495993
Identification and functional characterization of CbaR, a MarR-like modulator of the cbaABC-encoded chlorobenzoate catabolism pathway.
Providenti MA, Wyndham RC. Providenti MA, et al. Appl Environ Microbiol. 2001 Aug;67(8):3530-41. doi: 10.1128/AEM.67.8.3530-3541.2001. Appl Environ Microbiol. 2001. PMID: 11472929 Free PMC article.
The cis-diol dehydrogenase cbaC gene of Tn5271 is required for growth on 3-chlorobenzoate but not 3,4-dichlorobenzoate.
Nakatsu CH, Providenti M, Wyndham RC. Nakatsu CH, et al. Among authors: providenti m. Gene. 1997 Sep 1;196(1-2):209-18. doi: 10.1016/s0378-1119(97)00229-1. Gene. 1997. PMID: 9322760
Metabolism of isovanillate, vanillate, and veratrate by Comamonas testosteroni strain BR6020.
Providenti MA, O'Brien JM, Ruff J, Cook AM, Lambert IB. Providenti MA, et al. J Bacteriol. 2006 Jun;188(11):3862-9. doi: 10.1128/JB.01675-05. J Bacteriol. 2006. PMID: 16707678 Free PMC article.
Identification and application of AFLP-derived genetic markers for quantitative PCR-based tracking of Bacillus and Paenibacillus spp. released in soil.
Providenti MA, Begin M, Hynes S, Lamarche C, Chitty D, Hahn J, Beaudette LA, Scroggins R, Smith ML. Providenti MA, et al. Can J Microbiol. 2009 Oct;55(10):1166-75. doi: 10.1139/w09-071. Can J Microbiol. 2009. PMID: 19935889
Determining the environmental fate of a filamentous fungus, Trichoderma reesei, in laboratory-contained intact soil-core microcosms using competitive PCR and viability plating.
Providenti MA, Mautner SI, Chaudhry O, Bombardier M, Scroggins R, Gregorich E, Smith ML. Providenti MA, et al. Can J Microbiol. 2004 Aug;50(8):623-31. doi: 10.1139/w04-053. Can J Microbiol. 2004. PMID: 15467788
The locus coding for the 3-nitrobenzoate dioxygenase of Comamonas sp. strain JS46 is flanked by IS1071 elements and is subject to deletion and inversion events.
Providenti MA, Shaye RE, Lynes KD, McKenna NT, O'brien JM, Rosolen S, Wyndham RC, Lambert IB. Providenti MA, et al. Appl Environ Microbiol. 2006 Apr;72(4):2651-60. doi: 10.1128/AEM.72.4.2651-2660.2006. Appl Environ Microbiol. 2006. PMID: 16597970 Free PMC article.
Nutrient-enhanced survival of and phenanthrene mineralization by alginate-encapsulated and free Pseudomonas sp. UG14Lr cells in creosote-contaminated soil slurries.
Weir SC, Dupuis SP, Providenti MA, Lee H, Trevors JT. Weir SC, et al. Among authors: providenti ma. Appl Microbiol Biotechnol. 1995 Oct;43(5):946-51. doi: 10.1007/BF02431932. Appl Microbiol Biotechnol. 1995. PMID: 7576562
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