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MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score.
Pryszcz LP, Huerta-Cepas J, Gabaldón T. Pryszcz LP, et al. Nucleic Acids Res. 2011 Mar;39(5):e32. doi: 10.1093/nar/gkq953. Epub 2010 Dec 11. Nucleic Acids Res. 2011. PMID: 21149260 Free PMC article.
Genome Sequence of the Yeast Saprochaete ingens CBS 517.90.
Hodorová V, Lichancová H, Zubenko S, Sienkiewicz K, Penir SMU, Afanasyev P, Boceck D, Bonnin S, Hakobyan S, Smyczynska U, Zhivkoplias E, Zlatohurska M, Tralle E, Frolova A, Pryszcz LP, Brejová B, Vinař T, Nosek J. Hodorová V, et al. Among authors: pryszcz lp. Microbiol Resour Announc. 2019 Dec 12;8(50):e01366-19. doi: 10.1128/MRA.01366-19. Microbiol Resour Announc. 2019. PMID: 31831616 Free PMC article.
PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions.
Huerta-Cepas J, Capella-Gutierrez S, Pryszcz LP, Denisov I, Kormes D, Marcet-Houben M, Gabaldón T. Huerta-Cepas J, et al. Among authors: pryszcz lp. Nucleic Acids Res. 2011 Jan;39(Database issue):D556-60. doi: 10.1093/nar/gkq1109. Epub 2010 Nov 12. Nucleic Acids Res. 2011. PMID: 21075798 Free PMC article.
PTP-central: a comprehensive resource of protein tyrosine phosphatases in eukaryotic genomes.
Hatzihristidis T, Liu S, Pryszcz L, Hutchins AP, Gabaldón T, Tremblay ML, Miranda-Saavedra D. Hatzihristidis T, et al. Methods. 2014 Jan 15;65(2):156-64. doi: 10.1016/j.ymeth.2013.07.031. Epub 2013 Jul 31. Methods. 2014. PMID: 23911837
Unexpected genomic variability in clinical and environmental strains of the pathogenic yeast Candida parapsilosis.
Pryszcz LP, Németh T, Gácser A, Gabaldón T. Pryszcz LP, et al. Genome Biol Evol. 2013;5(12):2382-92. doi: 10.1093/gbe/evt185. Genome Biol Evol. 2013. PMID: 24259314 Free PMC article.
PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome.
Huerta-Cepas J, Capella-Gutiérrez S, Pryszcz LP, Marcet-Houben M, Gabaldón T. Huerta-Cepas J, et al. Among authors: pryszcz lp. Nucleic Acids Res. 2014 Jan;42(Database issue):D897-902. doi: 10.1093/nar/gkt1177. Epub 2013 Nov 25. Nucleic Acids Res. 2014. PMID: 24275491 Free PMC article.
Genome comparison of Candida orthopsilosis clinical strains reveals the existence of hybrids between two distinct subspecies.
Pryszcz LP, Németh T, Gácser A, Gabaldón T. Pryszcz LP, et al. Genome Biol Evol. 2014 May;6(5):1069-78. doi: 10.1093/gbe/evu082. Genome Biol Evol. 2014. PMID: 24747362 Free PMC article.
Metabolic gene clusters encoding the enzymes of two branches of the 3-oxoadipate pathway in the pathogenic yeast Candida albicans.
Gérecová G, Neboháčová M, Zeman I, Pryszcz LP, Tomáška Ľ, Gabaldón T, Nosek J. Gérecová G, et al. Among authors: pryszcz lp. FEMS Yeast Res. 2015 May;15(3):fov006. doi: 10.1093/femsyr/fov006. Epub 2015 Mar 4. FEMS Yeast Res. 2015. PMID: 25743787
Interactions between closely related bacterial strains are revealed by deep transcriptome sequencing.
González-Torres P, Pryszcz LP, Santos F, Martínez-García M, Gabaldón T, Antón J. González-Torres P, et al. Among authors: pryszcz lp. Appl Environ Microbiol. 2015 Dec;81(24):8445-56. doi: 10.1128/AEM.02690-15. Epub 2015 Oct 2. Appl Environ Microbiol. 2015. PMID: 26431969 Free PMC article.
The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis.
Pryszcz LP, Németh T, Saus E, Ksiezopolska E, Hegedűsová E, Nosek J, Wolfe KH, Gacser A, Gabaldón T. Pryszcz LP, et al. PLoS Genet. 2015 Oct 30;11(10):e1005626. doi: 10.1371/journal.pgen.1005626. eCollection 2015 Oct. PLoS Genet. 2015. PMID: 26517373 Free PMC article.
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