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104 results
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Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions.
Jothi R, Cherukuri PF, Tasneem A, Przytycka TM. Jothi R, et al. Among authors: przytycka tm. J Mol Biol. 2006 Sep 29;362(4):861-75. doi: 10.1016/j.jmb.2006.07.072. Epub 2006 Aug 1. J Mol Biol. 2006. PMID: 16949097 Free PMC article.
Recursive domains in proteins.
Przytycka T, Srinivasan R, Rose GD. Przytycka T, et al. Protein Sci. 2002 Feb;11(2):409-17. doi: 10.1110/ps.24701. Protein Sci. 2002. PMID: 11790851 Free PMC article.
Scale-free networks versus evolutionary drift.
Przytycka TM, Yu YK. Przytycka TM, et al. Comput Biol Chem. 2004 Oct;28(4):257-64. doi: 10.1016/j.compbiolchem.2004.07.001. Comput Biol Chem. 2004. PMID: 15548452 Free PMC article.
Predicting protein-protein interaction by searching evolutionary tree automorphism space.
Jothi R, Kann MG, Przytycka TM. Jothi R, et al. Among authors: przytycka tm. Bioinformatics. 2005 Jun;21 Suppl 1(Suppl 1):i241-50. doi: 10.1093/bioinformatics/bti1009. Bioinformatics. 2005. PMID: 15961463 Free PMC article.
COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations.
Jothi R, Zotenko E, Tasneem A, Przytycka TM. Jothi R, et al. Among authors: przytycka tm. Bioinformatics. 2006 Apr 1;22(7):779-88. doi: 10.1093/bioinformatics/btl009. Epub 2006 Jan 24. Bioinformatics. 2006. PMID: 16434444 Free PMC article.
Graph theoretical insights into evolution of multidomain proteins.
Przytycka T, Davis G, Song N, Durand D. Przytycka T, et al. J Comput Biol. 2006 Mar;13(2):351-63. doi: 10.1089/cmb.2006.13.351. J Comput Biol. 2006. PMID: 16597245 Free PMC article.
Refining multiple sequence alignments with conserved core regions.
Chakrabarti S, Lanczycki CJ, Panchenko AR, Przytycka TM, Thiessen PA, Bryant SH. Chakrabarti S, et al. Among authors: przytycka tm. Nucleic Acids Res. 2006 May 17;34(9):2598-606. doi: 10.1093/nar/gkl274. Print 2006. Nucleic Acids Res. 2006. PMID: 16707662 Free PMC article.
Decomposition of overlapping protein complexes: a graph theoretical method for analyzing static and dynamic protein associations.
Zotenko E, Guimarães KS, Jothi R, Przytycka TM. Zotenko E, et al. Among authors: przytycka tm. Algorithms Mol Biol. 2006 Apr 26;1(1):7. doi: 10.1186/1748-7188-1-7. Algorithms Mol Biol. 2006. PMID: 16722537 Free PMC article.
Secondary structure spatial conformation footprint: a novel method for fast protein structure comparison and classification.
Zotenko E, O'Leary DP, Przytycka TM. Zotenko E, et al. Among authors: przytycka tm. BMC Struct Biol. 2006 Jun 8;6:12. doi: 10.1186/1472-6807-6-12. BMC Struct Biol. 2006. PMID: 16762072 Free PMC article.
Predicting domain-domain interactions using a parsimony approach.
Guimarães KS, Jothi R, Zotenko E, Przytycka TM. Guimarães KS, et al. Among authors: przytycka tm. Genome Biol. 2006;7(11):R104. doi: 10.1186/gb-2006-7-11-r104. Genome Biol. 2006. PMID: 17094802 Free PMC article.
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