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eQTL Epistasis - Challenges and Computational Approaches.
Huang Y, Wuchty S, Przytycka TM. Huang Y, et al. Among authors: przytycka tm. Front Genet. 2013 May 31;4:51. doi: 10.3389/fgene.2013.00051. eCollection 2013. Front Genet. 2013. PMID: 23755066 Free PMC article.
Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions.
Jothi R, Cherukuri PF, Tasneem A, Przytycka TM. Jothi R, et al. Among authors: przytycka tm. J Mol Biol. 2006 Sep 29;362(4):861-75. doi: 10.1016/j.jmb.2006.07.072. Epub 2006 Aug 1. J Mol Biol. 2006. PMID: 16949097 Free PMC article.
Interrogating domain-domain interactions with parsimony based approaches.
GuimarĂ£es KS, Przytycka TM. GuimarĂ£es KS, et al. Among authors: przytycka tm. BMC Bioinformatics. 2008 Mar 26;9:171. doi: 10.1186/1471-2105-9-171. BMC Bioinformatics. 2008. PMID: 18366803 Free PMC article.
Graph theoretical approach to study eQTL: a case study of Plasmodium falciparum.
Huang Y, Wuchty S, Ferdig MT, Przytycka TM. Huang Y, et al. Among authors: przytycka tm. Bioinformatics. 2009 Jun 15;25(12):i15-20. doi: 10.1093/bioinformatics/btp189. Bioinformatics. 2009. PMID: 19477981 Free PMC article.
The crosstalk between EGF, IGF, and Insulin cell signaling pathways--computational and experimental analysis.
Zielinski R, Przytycki PF, Zheng J, Zhang D, Przytycka TM, Capala J. Zielinski R, et al. Among authors: przytycka tm. BMC Syst Biol. 2009 Sep 4;3:88. doi: 10.1186/1752-0509-3-88. BMC Syst Biol. 2009. PMID: 19732446 Free PMC article.
Identifying causal genes and dysregulated pathways in complex diseases.
Kim YA, Wuchty S, Przytycka TM. Kim YA, et al. Among authors: przytycka tm. PLoS Comput Biol. 2011 Mar;7(3):e1001095. doi: 10.1371/journal.pcbi.1001095. Epub 2011 Mar 3. PLoS Comput Biol. 2011. PMID: 21390271 Free PMC article.
Modeling information flow in biological networks.
Kim YA, Przytycki JH, Wuchty S, Przytycka TM. Kim YA, et al. Among authors: przytycka tm. Phys Biol. 2011 Jun;8(3):035012. doi: 10.1088/1478-3975/8/3/035012. Epub 2011 May 13. Phys Biol. 2011. PMID: 21572171 Free PMC article. Review.
Symmetric Epistasis Estimation (SEE) and its application to dissecting interaction map of Plasmodium falciparum.
Huang Y, Siwo G, Wuchty S, Ferdig MT, Przytycka TM. Huang Y, et al. Among authors: przytycka tm. Mol Biosyst. 2012 Apr;8(5):1544-52. doi: 10.1039/c2mb05333k. Epub 2012 Mar 15. Mol Biosyst. 2012. PMID: 22419061 Free PMC article.
Chapter 5: Network biology approach to complex diseases.
Cho DY, Kim YA, Przytycka TM. Cho DY, et al. Among authors: przytycka tm. PLoS Comput Biol. 2012;8(12):e1002820. doi: 10.1371/journal.pcbi.1002820. Epub 2012 Dec 27. PLoS Comput Biol. 2012. PMID: 23300411 Free PMC article.
Module cover - a new approach to genotype-phenotype studies.
Kim YA, Salari R, Wuchty S, Przytycka TM. Kim YA, et al. Among authors: przytycka tm. Pac Symp Biocomput. 2013:135-46. Pac Symp Biocomput. 2013. PMID: 23424119 Free PMC article.
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