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TM4: a free, open-source system for microarray data management and analysis.
Saeed AI, Sharov V, White J, Li J, Liang W, Bhagabati N, Braisted J, Klapa M, Currier T, Thiagarajan M, Sturn A, Snuffin M, Rezantsev A, Popov D, Ryltsov A, Kostukovich E, Borisovsky I, Liu Z, Vinsavich A, Trush V, Quackenbush J. Saeed AI, et al. Among authors: Quackenbush J. Biotechniques. 2003 Feb;34(2):374-8. doi: 10.2144/03342mt01. Biotechniques. 2003. PMID: 12613259 No abstract available.
Synchronous global assessment of gene and protein expression in colorectal cancer progression.
Kwong KY, Bloom GC, Yang I, Boulware D, Coppola D, Haseman J, Chen E, McGrath A, Makusky AJ, Taylor J, Steiner S, Zhou J, Yeatman TJ, Quackenbush J. Kwong KY, et al. Among authors: Quackenbush J. Genomics. 2005 Aug;86(2):142-58. doi: 10.1016/j.ygeno.2005.03.012. Genomics. 2005. PMID: 15951154
Submission of microarray data to public repositories.
Ball CA, Brazma A, Causton H, Chervitz S, Edgar R, Hingamp P, Matese JC, Parkinson H, Quackenbush J, Ringwald M, Sansone SA, Sherlock G, Spellman P, Stoeckert C, Tateno Y, Taylor R, White J, Winegarden N. Ball CA, et al. Among authors: Quackenbush J. PLoS Biol. 2004 Sep;2(9):E317. doi: 10.1371/journal.pbio.0020317. Epub 2004 Aug 31. PLoS Biol. 2004. PMID: 15340489 Free PMC article.
Open source software for the analysis of microarray data.
Dudoit S, Gentleman RC, Quackenbush J. Dudoit S, et al. Among authors: Quackenbush J. Biotechniques. 2003 Mar;Suppl:45-51. Biotechniques. 2003. PMID: 12664684 Review.
TM4 microarray software suite.
Saeed AI, Bhagabati NK, Braisted JC, Liang W, Sharov V, Howe EA, Li J, Thiagarajan M, White JA, Quackenbush J. Saeed AI, et al. Among authors: Quackenbush J. Methods Enzymol. 2006;411:134-93. doi: 10.1016/S0076-6879(06)11009-5. Methods Enzymol. 2006. PMID: 16939790 Review.
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