Quinlan AR - Search Results

1

GEMINI: integrative exploration of genetic variation and genome annotations.

Paila U, Chapman BA, Kirchner R, Quinlan AR. Paila U, et al. Among authors: quinlan ar. PLoS Comput Biol. 2013;9(7):e1003153. doi: 10.1371/journal.pcbi.1003153. Epub 2013 Jul 18. PLoS Comput Biol. 2013. PMID: 23874191 Free PMC article.

2

BEDTools: a flexible suite of utilities for comparing genomic features.

Quinlan AR, Hall IM. Quinlan AR, et al. Bioinformatics. 2010 Mar 15;26(6):841-2. doi: 10.1093/bioinformatics/btq033. Epub 2010 Jan 28. Bioinformatics. 2010. PMID: 20110278 Free PMC article.

3

Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome.

Quinlan AR, Clark RA, Sokolova S, Leibowitz ML, Zhang Y, Hurles ME, Mell JC, Hall IM. Quinlan AR, et al. Genome Res. 2010 May;20(5):623-35. doi: 10.1101/gr.102970.109. Epub 2010 Mar 22. Genome Res. 2010. PMID: 20308636 Free PMC article.

4

Genome sequencing of mouse induced pluripotent stem cells reveals retroelement stability and infrequent DNA rearrangement during reprogramming.

Quinlan AR, Boland MJ, Leibowitz ML, Shumilina S, Pehrson SM, Baldwin KK, Hall IM. Quinlan AR, et al. Cell Stem Cell. 2011 Oct 4;9(4):366-73. doi: 10.1016/j.stem.2011.07.018. Cell Stem Cell. 2011. PMID: 21982236 Free PMC article.

5

Characterizing complex structural variation in germline and somatic genomes.

Quinlan AR, Hall IM. Quinlan AR, et al. Trends Genet. 2012 Jan;28(1):43-53. doi: 10.1016/j.tig.2011.10.002. Epub 2011 Nov 15. Trends Genet. 2012. PMID: 22094265 Free PMC article. Review.

6

Detection and interpretation of genomic structural variation in mammals.

Hall IM, Quinlan AR. Hall IM, et al. Among authors: quinlan ar. Methods Mol Biol. 2012;838:225-48. doi: 10.1007/978-1-61779-507-7_11. Methods Mol Biol. 2012. PMID: 22228015 Review.

7

Binary Interval Search: a scalable algorithm for counting interval intersections.

Layer RM, Skadron K, Robins G, Hall IM, Quinlan AR. Layer RM, et al. Among authors: quinlan ar. Bioinformatics. 2013 Jan 1;29(1):1-7. doi: 10.1093/bioinformatics/bts652. Epub 2012 Nov 4. Bioinformatics. 2013. PMID: 23129298 Free PMC article.

8

Breakpoint profiling of 64 cancer genomes reveals numerous complex rearrangements spawned by homology-independent mechanisms.

Malhotra A, Lindberg M, Faust GG, Leibowitz ML, Clark RA, Layer RM, Quinlan AR, Hall IM. Malhotra A, et al. Among authors: quinlan ar. Genome Res. 2013 May;23(5):762-76. doi: 10.1101/gr.143677.112. Epub 2013 Feb 14. Genome Res. 2013. PMID: 23410887 Free PMC article.

9

Poretools: a toolkit for analyzing nanopore sequence data.

Loman NJ, Quinlan AR. Loman NJ, et al. Among authors: quinlan ar. Bioinformatics. 2014 Dec 1;30(23):3399-401. doi: 10.1093/bioinformatics/btu555. Epub 2014 Aug 20. Bioinformatics. 2014. PMID: 25143291 Free PMC article.

10

BEDTools: The Swiss-Army Tool for Genome Feature Analysis.

Quinlan AR. Quinlan AR. Curr Protoc Bioinformatics. 2014 Sep 8;47:11.12.1-34. doi: 10.1002/0471250953.bi1112s47. Curr Protoc Bioinformatics. 2014. PMID: 25199790 Free PMC article.

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